CX292070

Overview
NameCX292070
Unique NameCX292070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14900 contig Ccv1_Contig14900:1..483. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 8.257e-54
Identity = 105/124 (84.68%), Postives = 106/124 (85.48%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR 124          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 8.257e-54
Identity = 105/124 (84.68%), Postives = 106/124 (85.48%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR 124          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.840e-53
Identity = 104/124 (83.87%), Postives = 107/124 (86.29%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRDSMH                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR
Sbjct:    1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGR 124          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.009e-51
Identity = 103/124 (83.06%), Postives = 105/124 (84.68%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRDS+H                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR
Sbjct:    1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGR 124          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.318e-51
Identity = 99/124 (79.84%), Postives = 105/124 (84.68%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRDS+H                 YE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR
Sbjct:    1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGR 124          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_THEPA (40S ribosomal protein S8 OS=Theileria parva GN=RPS8 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.198e-36
Identity = 75/124 (60.48%), Postives = 93/124 (75.00%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRDS H                 YELGR  +NTKL S K VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYG+++G+
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-KLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELGK 123          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.198e-36
Identity = 74/124 (59.68%), Postives = 89/124 (71.77%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRD+ H                 YELGR P+NTKL   K +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR
Sbjct:    1 MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGP-KRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGR 123          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_GRIJA (40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.669e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRDS H                 YELGRQPA TK+   K VR +RVRGGN+K RALRL++GN++WGSEA T K+RIL+VVYNASNNELVRT T VK  I+Q+DA PF+Q+Y  HYG+DIG+
Sbjct:    1 MGISRDSRHKRRLTGGKHPYTCKKRKYELGRQPAMTKIGG-KLVRTVRVRGGNLKSRALRLESGNFAWGSEAFTSKSRILNVVYNASNNELVRTNTFVKGCIIQIDATPFRQYYHNHYGIDIGK 123          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_THEAN (40S ribosomal protein S8 OS=Theileria annulata GN=RPS8 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.014e-35
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDI 428
            MGISRDS H                 YELGR  +NTKL S + VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYGV++
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-RLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGVEL 121          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_APIME (40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.259e-35
Identity = 74/124 (59.68%), Postives = 87/124 (70.16%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRD  H                 +ELGR  ANTKL   + +  +R RGGN K+RALRLDTGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA PF+QWY  HY + +GR
Sbjct:    1 MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQR-IHTVRTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGR 123          
The following BLAST results are available for this feature:
BLAST of CX292070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_ORYSJ8.257e-5484.6840S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_MAIZE8.257e-5484.6840S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_PRUAR1.840e-5383.8740S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH1.009e-5183.0640S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH1.318e-5179.8440S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_THEPA1.198e-3660.4840S ribosomal protein S8 OS=Theileria parva GN=RPS... [more]
RS8_ICTPU1.198e-3659.6840S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_GRIJA2.669e-3660.4840S ribosomal protein S8 OS=Griffithsia japonica G... [more]
RS8_THEAN1.014e-3560.6640S ribosomal protein S8 OS=Theileria annulata GN=... [more]
RS8_APIME2.259e-3559.6840S ribosomal protein S8 OS=Apis mellifera GN=RpS8... [more]

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Properties
Property NameValue
Genbank descriptionC04010B07SK FlavFr1 Citrus clementina cDNA clone C04010B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292070 ID=CX292070; Name=CX292070; organism=Citrus clementina; type=EST; length=490bp
AAACGCTGAATCACCTATCAATCGCCCAGACAGAGAAACCCTAAGAATTT
CTCTCTGCGAAAATGGGTATTTCCCGTGATTCCATGCACAAGAGGCGTGC
TACTGGGGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTG
GAAGGCAACCTGCAAATACTAAGCTATCAAGCAACAAGACAGTGAGGAGG
ATTAGGGTTCGTGGAGGTAATGTGAAATGGCGTGCTTTGAGGCTTGACAC
AGGAAACTACTCCTGGGGAAGTGAAGCAGTGACTCGTAAGACCAGAATTC
TGGATGTGGTATACAATGCCTCCAATAATGAGCTGGTCCGTACTCAAACT
TTGGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCATTCAAGCAGTG
GTATCTCCAGCATTATGGTGTTGACATTGGTCGCAAGAAGAAGGCTGCAG
CTGCTGCCACAACCAAGAAAGAAGGAGAGGAAGGAGAGGC
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