CX292076

Overview
NameCX292076
Unique NameCX292076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292076_ssr68 microsatellite CX292076_ssr68:68..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15376 contig Ccv1_Contig15376:18..486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX292076 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.642e-24
Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 2 
Query:  146 QVARCQSDSETGVAETEGGDLGIVGEDAQDFG-------DGTFSPAPGVDTVCIFPKNRARVVAAGE*TELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATV 469
            QVARCQSD+E   +  +     +VGE+  D         D   S  PGV+TVC+FPKN A++V AGE TELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++
Sbjct:   20 QVARCQSDAEDHSSLVDD----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASI 130
The following BLAST results are available for this feature:
BLAST of CX292076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SSRA_ARATH3.642e-2452.17Translocon-associated protein subunit alpha OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC04010C01SK FlavFr1 Citrus clementina cDNA clone C04010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292076 ID=CX292076; Name=CX292076; organism=Citrus clementina; type=EST; length=469bp
TAGCTTTGGCGGTGTATTCACTGATCACCTTCATTCAATTCCAAAGCGGC
GTCGTGTCAATTCAAACAACAAACAAACAACCATGGAGATGAATACGTTT
AGGGTTTTCTTCTTCGCTCTCCTCCTTCTAGCCTCTCCTCTTCTTCAAGT
TGCTAGGTGTCAATCGGATTCGGAAACGGGAGTTGCAGAGACCGAAGGGG
GTGATCTTGGGATTGTTGGTGAGGATGCTCAAGATTTTGGTGATGGGACT
TTTAGCCCTGCTCCAGGAGTGGATACTGTCTGTATCTTCCCTAAAAATCG
CGCCCGAGTGGTGGCTGCTGGAGAATAAACTGAACTACTGGTTGGGATGA
AAAATGATGGGGAGTCAAGCGTGAATGTGATTGCAATTCAGGCCAGTGTT
CATCTCCCTTTTGATCACAGTCTTTTGGTTCAAAATCTCACTGGACAGGC
CTTTAACAATGCAACTGTG
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