CX292081

Overview
NameCX292081
Unique NameCX292081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB3_BRANA (Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.406e-92
Identity = 159/180 (88.33%), Postives = 172/180 (95.56%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 541
            WAAQFYKYR+PRQWL+S GLGAMGFGLPAAIGA+VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+KILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP+RE+EIFPNML+FA ACGIP A+VT+K +LR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG FKDVITEGDGRT+Y
Sbjct:  473 WAAQFYKYRKPRQWLSSSGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVTKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGRTKY 652          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB1_BRANA (Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.406e-92
Identity = 159/180 (88.33%), Postives = 172/180 (95.56%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 541
            WAAQFYKYR+PRQWL+S GLGAMGFGLPAAIGA+VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+KILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP+RE+EIFPNML+FA ACGIP A+VT+K +LR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG FKDVITEGDGRT+Y
Sbjct:  476 WAAQFYKYRKPRQWLSSSGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVTKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGRTKY 655          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB2_TOBAC (Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.294e-91
Identity = 157/180 (87.22%), Postives = 170/180 (94.44%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 541
            WAAQ+YKYR+PRQWLTSGGLGAMGFGLPAAIGAAV  PD ++VDIDGDGSFIMNVQELATIKVE LP+KI+LLNNQHLGMV+QWEDRFYKANRAHTYLG+PS E+EIFPNMLKFAEACG+P A+VT + DLRAAIQ MLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGR+ Y
Sbjct:  485 WAAQYYKYRKPRQWLTSGGLGAMGFGLPAAIGAAVGRPDEVVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEACGVPAARVTHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRSSY 664          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB1_TOBAC (Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.294e-91
Identity = 157/180 (87.22%), Postives = 170/180 (94.44%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 541
            WAAQ+YKYR+PRQWLTSGGLGAMGFGLPAAIGAAV  PD ++VDIDGDGSFIMNVQELATIKVE LP+KI+LLNNQHLGMV+QWEDRFYKANRAHTYLG+PS E+EIFPNMLKFAEACG+P A+VT + DLRAAIQ MLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGR+ Y
Sbjct:  488 WAAQYYKYRKPRQWLTSGGLGAMGFGLPAAIGAAVGRPDEVVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEACGVPAARVTHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRSSY 667          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_ARATH (Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.441e-90
Identity = 155/180 (86.11%), Postives = 169/180 (93.89%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 541
            WAAQFY Y++PRQWL+SGGLGAMGFGLPAAIGA+VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+K+LLLNNQHLGMVMQWEDRFYKANRAHT+LGDP++E EIFPNML FA ACGIP A+VT+KADLR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG F DVITEGDGR +Y
Sbjct:  491 WAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGRIKY 670          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB1_ORYSJ (Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 8.144e-78
Identity = 130/180 (72.22%), Postives = 159/180 (88.33%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 541
            WAAQ+Y Y+RPRQWL+S GLGAMGFGLPAA GA+VANP   +VDIDGDGSF+MN+QELA I++E LP+K+++LNNQHLGMV+QWEDRFYKANRAHTYLG+P  ESEI+P+ +  A+   IP  +VT+K+++RAAI+ ML+TPGPYLLD+IVPHQEHVLPMIPSGGAFKD+I +GDGRT Y
Sbjct:  465 WAAQYYTYKRPRQWLSSAGLGAMGFGLPAAAGASVANPGVTVVDIDGDGSFLMNIQELALIRIENLPVKVMVLNNQHLGMVVQWEDRFYKANRAHTYLGNPECESEIYPDFVTIAKGFNIPAVRVTKKSEVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 644          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB1_MAIZE (Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.064e-77
Identity = 131/180 (72.78%), Postives = 157/180 (87.22%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 541
            WAAQ+Y Y+RPRQWL+S GLGAMGFGLPAA GA+VANP   +VDIDGDGSF+MNVQELA I++E LP+K+ +LNNQHLGMV+QWEDRFYKANRAHTYLG+P  ESEI+P+ +  A+   IP  +VT+K ++RAAI+ ML+TPGPYLLD+IVPHQEHVLPMIPSGGAFKD+I +GDGRT Y
Sbjct:  459 WAAQYYTYKRPRQWLSSAGLGAMGFGLPAAAGASVANPGVTVVDIDGDGSFLMNVQELAMIRIENLPVKVFVLNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNIPAVRVTKKNEVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 638          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB2_BRANA (Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 5.278e-77
Identity = 127/171 (74.27%), Postives = 155/171 (90.64%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 514
            WAAQFY++++PRQWL+SGGLGAMGFGLPAA+GAA+ANP A++VDIDGDGSFIMN+QELATI+VE LP+K+LL+NNQHLGMV+QWED FY ANRA ++LGDP+    +FP+ML FA +CGIP A+VTR+ DLR AIQTMLDTPGP+LLDV+ PHQ+HVLP+IPSGG FKD+I
Sbjct:  466 WAAQFYRFKKPRQWLSSGGLGAMGFGLPAAMGAAIANPGAVVVDIDGDGSFIMNIQELATIRVENLPVKVLLINNQHLGMVLQWEDHFYAANRADSFLGDPANPEAVFPDMLLFAASCGIPAARVTRREDLREAIQTMLDTPGPFLLDVVCPHQDHVLPLIPSGGTFKDII 636          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB2_MAIZE (Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.176e-76
Identity = 128/180 (71.11%), Postives = 156/180 (86.67%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 541
            WAAQ+Y Y+RPRQWL+S GLGAMGFGLPAA GAAVANP   +VDIDGDGSF+MN+QELA I++E LP+K+ +LNNQHLGMV+QWEDRFYKANRAHT+LG+P  ESEI+P+ +  A+   IP  +VT+K+++ AAI+ ML+ PGPYLLD+IVPHQEHVLPMIPSGGAFKD+I +GDGRT Y
Sbjct:  459 WAAQYYTYKRPRQWLSSAGLGAMGFGLPAAAGAAVANPGVTVVDIDGDGSFLMNIQELAMIRIENLPVKVFVLNNQHLGMVVQWEDRFYKANRAHTFLGNPENESEIYPDFVAIAKGFNIPAVRVTKKSEVHAAIKKMLEAPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 638          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB2_ORYSJ (Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 2.076e-73
Identity = 125/182 (68.68%), Postives = 152/182 (83.52%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE--SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 541
            WA Q Y YRRPRQWL+S GLGAMGFGLPAA GAAVANP A +VDIDGDGS +MN+QELA ++VE LP+K+++LNNQHLGMV+QWEDRFY ANRAHTYLG+P+     E++P+ +  A   GIP A+VTRK ++RAA++ M+  PGPYLLDV+VPHQEHVLPMIPS GAFKD+I +GDGR+ Y
Sbjct:  482 WATQHYTYRRPRQWLSSAGLGAMGFGLPAAAGAAVANPGATVVDIDGDGSLLMNIQELAMVRVEDLPVKVMVLNNQHLGMVVQWEDRFYDANRAHTYLGNPAANGGGEVYPDFVTIAGGFGIPAARVTRKGEVRAAVEEMMAAPGPYLLDVVVPHQEHVLPMIPSNGAFKDIIVDGDGRSSY 663          
The following BLAST results are available for this feature:
BLAST of CX292081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ILVB3_BRANA3.406e-9288.33Acetolactate synthase 3, chloroplastic OS=Brassica... [more]
ILVB1_BRANA3.406e-9288.33Acetolactate synthase 1, chloroplastic OS=Brassica... [more]
ILVB2_TOBAC1.294e-9187.22Acetolactate synthase 2, chloroplastic OS=Nicotian... [more]
ILVB1_TOBAC1.294e-9187.22Acetolactate synthase 1, chloroplastic OS=Nicotian... [more]
ILVB_ARATH2.441e-9086.11Acetolactate synthase, chloroplastic OS=Arabidopsi... [more]
ILVB1_ORYSJ8.144e-7872.22Acetolactate synthase 1, chloroplastic OS=Oryza sa... [more]
ILVB1_MAIZE1.064e-7772.78Acetolactate synthase 1, chloroplastic OS=Zea mays... [more]
ILVB2_BRANA5.278e-7774.27Acetolactate synthase 2, chloroplastic OS=Brassica... [more]
ILVB2_MAIZE1.176e-7671.11Acetolactate synthase 2, chloroplastic OS=Zea mays... [more]
ILVB2_ORYSJ2.076e-7368.68Probable acetolactate synthase 2, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionC04010C06SK FlavFr1 Citrus clementina cDNA clone C04010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292081 ID=CX292081; Name=CX292081; organism=Citrus clementina; type=EST; length=618bp
GTGGGCTGCTCAGTTTTACAAGTACAGGAGACCTCGCCAGTGGCTAACAT
CTGGAGGACTAGGGGCTATGGGTTTTGGATTGCCCGCTGCAATCGGAGCT
GCTGTTGCAAATCCTGATGCCATCATTGTAGATATTGATGGTGATGGGAG
TTTCATCATGAACGTCCAGGAGTTGGCGACTATTAAGGTAGAGAAACTCC
CCATCAAGATATTGCTGTTGAATAATCAGCACTTGGGCATGGTGATGCAA
TGGGAGGATCGGTTTTACAAGGCAAATAGGGCTCACACGTATTTGGGAGA
TCCATCAAGAGAGTCTGAAATATTTCCGAATATGTTGAAGTTTGCAGAAG
CCTGTGGAATACCTGGAGCACAAGTAACAAGGAAGGCAGATCTGAGAGCC
GCAATTCAGACTATGTTGGACACTCCTGGACCATACCTTCTGGACGTCAT
CGTTCCTCATCAAGAGCATGTCCTGCCTATGATCCCCAGTGGTGGAGCTT
TTAAAGATGTGATCACTGAAGGTGATGGAAGAACGCAGTATTAACGACAA
GCTGAAGCAGCATAGATGCCTTCTTGGCTATGTATTTATGTTCCTTTTGA
GTTGCAGGCTTAACTTAC
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