CX292087

Overview
NameCX292087
Unique NameCX292087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig376 contig Ccv1_Contig376:41..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.051e-70
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGKT GMGA RKLK+HRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.793e-70
Identity = 130/133 (97.74%), Postives = 130/133 (97.74%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGKTRGMGA RKLK HRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 1.678e-68
Identity = 128/133 (96.24%), Postives = 128/133 (96.24%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 2.052e-66
Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGKTRGMGAGRKLK  R TQRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.412e-59
Identity = 109/134 (81.34%), Postives = 117/134 (87.31%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGK RG+   RKLK HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALY 134          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.508e-58
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGK +G+ A RKLKTHR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+  SL+ALF
Sbjct:    1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALF 134          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.582e-58
Identity = 107/134 (79.85%), Postives = 117/134 (87.31%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGK RG+   RK ++HRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.970e-57
Identity = 103/134 (76.87%), Postives = 117/134 (87.31%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGK +G+   RKLKTHR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR GHAVGDIPGVRFK+VKV+  SL+ALF
Sbjct:    1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALF 134          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.878e-57
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGK RG+   RK   HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 3.878e-57
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = 3
Query:   36 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
The following BLAST results are available for this feature:
BLAST of CX292087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_EUPES1.051e-7097.7440S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS23_FRAAN1.793e-7097.7440S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS232_ARATH1.678e-6896.2440S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH2.052e-6694.7440S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU5.412e-5981.3440S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_BRUMA3.508e-5879.1040S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_DERVA4.582e-5879.8540S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_CAEEL2.970e-5776.8740S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SPOFR3.878e-5778.3640S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_RAT3.878e-5779.1040S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC04010D03SK FlavFr1 Citrus clementina cDNA clone C04010D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292087 ID=CX292087; Name=CX292087; organism=Citrus clementina; type=EST; length=564bp
GCCTCGTAGCAGTCGAGTAACTACAATCAGGAATCATGGGGAAGACACGT
GGTATGGGAGCTGGTCGCAAGCTGAAGACTCACCGTAGGACTCAAAGGTG
GGCTGATAAGTCATACAAAAAGTCTCACCTCGGCAATGAGTGGAAGAAGC
CATTTGCTGGTTCTTCCCATGCTAAAGGAATTGTTCTTGAGAAGATAGGT
ATTGAAGCTAAGCAGCCTAACTCTGCTATTCGTAAGTGTGCTAGAGTTCA
ACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATGATGGTT
GCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGATTTGGA
CGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAAGGTTGT
GAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAGAAGAAGGAGA
AGCCCAGGTCTTAAGAGAAGAGACCTGTCTTAACCTGCAAACTCTTTGAT
AGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGTTCTCGAGTGGATTTT
ATGAACAATTTTTT
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