CX292091

Overview
NameCX292091
Unique NameCX292091
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292091 vs. ExPASy Swiss-Prot
Match: KEULE_ARATH (SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 8.752e-59
Identity = 114/183 (62.30%), Postives = 136/183 (74.32%), Query Frame = 3
Query:    3 KMVQALPQYSDQIDKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVTRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIXXXXXXXXXXXXXXDDYPCMNEP 551
            KMVQALPQYS+QIDKLSLHVEIA K+N +I               VFGDAG+KDV+K+ +T E+ +RE KLRLLMILA IYPEKF+GEKGQN+MKLA+L SDD+TAVNNM LLG A D KK++ G F+LKFD++KKKRAVRK+R  EE  WQLSRFYPMI              +D+PCMN+P
Sbjct:  362 KMVQALPQYSEQIDKLSLHVEIARKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKERQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDP 543          
BLAST of CX292091 vs. ExPASy Swiss-Prot
Match: SEC1B_ARATH (Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.001e-54
Identity = 107/184 (58.15%), Postives = 131/184 (71.20%), Query Frame = 3
Query:    3 KMVQALPQYSDQIDKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVTRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGA-SDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIXXXXXXXXXXXXXXDDYPCMNEP 551
            KMV ALPQYS+QIDKLSLHVEIA  IN+ I               VFGDAG KDV+KF +TN  ++ E+KLRL+MI+AAIYP+KF+GEKG+ +M+LA+L  DD+ AVNNMRLLG   ++ KKS+TG+F LKFD+ K KRA R+DR GE QTWQLSRFYP++               DYPCMNEP
Sbjct:  363 KMVHALPQYSEQIDKLSLHVEIARTINRTIMEQGLRDLGQLEQDLVFGDAGRKDVIKFLSTNHIISHESKLRLIMIVAAIYPKKFEGEKGRKMMELAKLSGDDVVAVNNMRLLGPVHTECKKSTTGSFPLKFDVLKTKRAARRDRVGETQTWQLSRFYPIVEELVEKLSKGHLPKQDYPCMNEP 546          
BLAST of CX292091 vs. ExPASy Swiss-Prot
Match: SEC1A_ARATH (Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 3.686e-49
Identity = 97/182 (53.30%), Postives = 123/182 (67.58%), Query Frame = 3
Query:    3 KMVQALPQYSDQIDKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVTRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIXXXXXXXXXXXXXXDDYPCMNE 548
            K+VQALPQY +Q+DKLS HVE+AGKIN+II               VFGDAG KDV+ F  TN+D   ENKLRLLMI A +YPEKF+G+KG  +M+LARL   D+  ++NM+L+ G+ +  K+ +G+FSLKFD  K K+A RKDR+GEE+TWQL RFYPMI               DY CMN+
Sbjct:  357 KIVQALPQYGEQVDKLSTHVELAGKINRIIRDTGLRDLGQLEQDLVFGDAGAKDVINFLRTNQDTNPENKLRLLMIYATVYPEKFEGDKGVKLMQLARLSPVDMKVISNMQLIAGSPE-NKAKSGSFSLKFDAGKTKQANRKDRSGEEETWQLFRFYPMIEELLEKLVKGDLSKSDYLCMNQ 537          
BLAST of CX292091 vs. ExPASy Swiss-Prot
Match: SEC1A_ORYSJ (Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.022e-47
Identity = 96/183 (52.46%), Postives = 123/183 (67.21%), Query Frame = 3
Query:    3 KMVQALPQYSDQIDKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVTRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIXXXXXXXXXXXXXXDDYPCMNEP 551
            KMVQALPQYSDQIDKL+LHVEIAGK+N  I               VFGDAG K+++ FF T+ D++RENKLRLLM+ AAI P+K + +KG  +M+LA L +DD+ AV+NMR L G  D KKSS G F+LKFD+ KK+  +RK+R GEE  W LSRFYP++              D+Y  +N+P
Sbjct:  362 KMVQALPQYSDQIDKLALHVEIAGKLNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDKTRSDKGAKLMQLAGLSADDMIAVSNMRCLCG-HDSKKSSAGGFTLKFDLRKKRHGIRKERIGEESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDP 543          
BLAST of CX292091 vs. ExPASy Swiss-Prot
Match: SEC1B_ORYSJ (Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.357e-43
Identity = 85/183 (46.45%), Postives = 119/183 (65.03%), Query Frame = 3
Query:    3 KMVQALPQYSDQIDKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVTRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIXXXXXXXXXXXXXXDDYPCMNEP 551
            K+VQALPQY +Q++KL+LH+EIAGKINK I               VFGDA  K+V+    + +D++ ENKLRLL+I A +YPEKF+G+KG+ +M+LA+L  D++ A+N++R L G+   K S  G FSLKFD  KKK A R +R   ++TW LSRF+P+I              ++YP M+EP
Sbjct:  359 KIVQALPQYGEQVEKLTLHIEIAGKINKFIREYGLRDIGQVEQDLVFGDAAAKEVISILRSKQDMSPENKLRLLIIYAIVYPEKFEGDKGEKLMQLAKLPHDEMDAINSLRYLVGSDTKKASRPGGFSLKFDAQKKKNAARTERQDGDETWALSRFFPLIEELIEKLSKGALPLNEYPSMSEP 541          
The following BLAST results are available for this feature:
BLAST of CX292091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KEULE_ARATH8.752e-5962.30SNARE-interacting protein KEULE OS=Arabidopsis tha... [more]
SEC1B_ARATH1.001e-5458.15Protein transport Sec1b OS=Arabidopsis thaliana GN... [more]
SEC1A_ARATH3.686e-4953.30Protein transport Sec1a OS=Arabidopsis thaliana GN... [more]
SEC1A_ORYSJ2.022e-4752.46Probable protein transport Sec1a OS=Oryza sativa s... [more]
SEC1B_ORYSJ1.357e-4346.45Probable protein transport Sec1b OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC04010D07SK FlavFr1 Citrus clementina cDNA clone C04010D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292091 ID=CX292091; Name=CX292091; organism=Citrus clementina; type=EST; length=551bp
AAAAGATGGTTCAAGCATTGCCACAATACAGTGACCAAATTGACAAGCTT
TCCCTCCATGTAGAGATTGCAGGAAAAATCAACAAAATAATCAGGGAGCT
GAGACTTAGAGAACTTGGCCAGCTGGAGCAGGACCTTGTTTTTGGTGATG
CAGGACTGAAGGATGTAGTTAAATTTTTTACTACAAATGAGGATGTTACT
CGTGAAAATAAGTTGCGTTTATTGATGATTCTTGCAGCCATTTATCCTGA
GAAGTTTCAGGGTGAAAAGGGTCAAAATATAATGAAGTTGGCAAGGTTAC
AGTCTGATGATATAACTGCTGTAAATAATATGAGACTGCTTGGGGGAGCA
TCAGATATCAAAAAAAGTTCGACTGGAGCTTTTTCTCTGAAGTTTGATAT
TAATAAGAAGAAGCGAGCAGTTAGGAAAGACCGCACTGGTGAAGAACAAA
CATGGCAGTTATCACGCTTTTACCCGATGATAGAGGAACTCATAGAAAAA
CTTGGTAAAAAAGAACTACCAAAGGATGATTATCCATGTATGAATGAGCC
G
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