CX292095

Overview
NameCX292095
Unique NameCX292095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292095 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.356e-58
Identity = 130/236 (55.08%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   26 NKKMDPSD-WDDFINYSFNDQN----------ASLDFSW--------PEQSGSADNDI-----------SSTGVVPQENEN-----TRKRARSDSCSRPG-SKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYMPTHPAAYHAGLNKMAVYPSYGLMPMWQYLP 625
            N + D  D + DF++Y  N Q           + LD S         PEQ G  D ++           SS G V +E E+     +RKRAR+ SCSR G +KACRE+LRRE+LN+RF+DLS +LEPGR  +TDKPAILDDAIR+LNQLR E+ +L+ETN+KL EEIKSLKAEKNELREEKL+LKADKEK EQQLK M  P+ G++P  PAA++   NKMAVYPSYG MPMW Y+P
Sbjct:   33 NLQTDQEDTFPDFVSYGVNLQQEPDEVFSIGASQLDLSSYNGVLSLEPEQVGQQDCEVVQEEEVEINSGSSGGAVKEEQEHLDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPHIPAAFNH--NKMAVYPSYGYMPMWHYMP 266          
BLAST of CX292095 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.251e-54
Identity = 112/172 (65.12%), Postives = 137/172 (79.65%), Query Frame = 2
Query:  134 NDISSTGVVPQENEN--TRKRARSDSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYMPT-HPAAYHAGLNKMAVYPSYGL----MPMWQYLPP 628
            N  SS G V +E E   + KR R+ SCS+PG+KACREKLRRE+LND+F+DLS +LEPGR  +TDK AILDDAIRV+NQLR E+ EL+ETN+KL EEIKSLKA+KNELREEKL+LKA+KEK+EQQLK M +P+ G+MP+ HPAA+H+  +KMAV   YG     MPMW  LPP
Sbjct:  135 NSSSSVGAVKEEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPSQHPAAFHS--HKMAVAYPYGYYPPNMPMWSPLPP 304          
BLAST of CX292095 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 93/191 (48.69%), Postives = 118/191 (61.78%), Query Frame = 2
Query:  101 FSWPEQSGSADNDISSTGV-------VPQENENTRKRARSDSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYMPTHP--------AAYHAGLNKMAVYPSYGLMPMWQYLPP 628
            FSWP Q     +  SS GV          +   ++KR R +S S   SKACREK RR+RLND+F++L  ILEPG P +TDK AIL DA+R++ QLR E+Q+LK++N  LQ++IK LK EKNELR+EK  LK +KEKLEQQLK M  P   + P  P        A   A  NKM    SY  + MWQ++PP
Sbjct:   28 FSWPVQQPIGVSSNSSAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPP 218          
BLAST of CX292095 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.914e-37
Identity = 87/198 (43.94%), Postives = 127/198 (64.14%), Query Frame = 2
Query:   62 INYSFNDQNASLDFSWPEQSGSADNDISSTGVVPQ----ENENTRKRARSDSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM---AMPTGGYMPTHPAAYHAGL--NKMAVYPSYGLMPMWQYLPP 628
            I  +F+DQN +  F W +  GSA   +   G +      +  ++RKR +++SC+   SKACREK RR+RLND+F +LS +LEPGR  +TDK AI++DAIR++NQ R E+Q+LK+ N  LQE+IK LK EKNELR+EK  LK +KE+++QQLK +     P   ++P       A    +K+  + +Y    MWQ++PP
Sbjct:   16 IEGAFSDQNPT--FPW-QIDGSATVSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQAPGSKLVPFTTYPGFAMWQFMPP 210          
BLAST of CX292095 vs. ExPASy Swiss-Prot
Match: BH121_ARATH (Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 55/134 (41.04%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  146 STGVVPQENENTRKRARSDSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL----EQQLKVMAMPTGGYM 535
            S  ++P E E        D  +R   KA REKLRRE+LN+ F++L  +L+P RP + DK  IL D +++L +L +E  +LK     L +E + L  EKN+LREEK  LK+D E L    +Q+L+ M+ P G  M
Sbjct:   43 SPSILPAEEEVM------DVSARKSQKAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMS-PWGAAM 168          
BLAST of CX292095 vs. ExPASy Swiss-Prot
Match: BH011_ARATH (Transcription factor bHLH11 OS=Arabidopsis thaliana GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.653e-14
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  125 SADNDISSTGVVPQENENTRKRARSDSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 499
            S+ +  SS+G   +  E   +  +   CS+   KA REKLRR++L ++FL+L   L+P RP ++DK ++L D I++L  +  +   LK   E L +E + L  EK+ELREEK  LK+D E L  Q
Sbjct:   19 SSASSSSSSGQNLRGAEMVVEVKKEAVCSQ---KAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQ 139          
The following BLAST results are available for this feature:
BLAST of CX292095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BH104_ARATH3.356e-5855.08Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
BH034_ARATH2.251e-5465.12Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
ILR3_ARATH4.868e-4148.69Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH1.914e-3743.94Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH121_ARATH8.362e-1741.04Transcription factor bHLH121 OS=Arabidopsis thalia... [more]
BH011_ARATH8.653e-1439.20Transcription factor bHLH11 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC04010D11SK FlavFr1 Citrus clementina cDNA clone C04010D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292095 ID=CX292095; Name=CX292095; organism=Citrus clementina; type=EST; length=628bp
CACGAGGATTTTGAAGGGAAATTGAAATAAAAAAATGGATCCGTCAGACT
GGGACGATTTTATCAATTACAGCTTCAATGATCAAAACGCATCTCTTGAT
TTCTCTTGGCCCGAACAAAGTGGCAGCGCCGATAATGATATTTCATCAAC
TGGGGTTGTTCCGCAAGAAAATGAAAATACGCGTAAAAGGGCGCGTAGTG
ATTCATGCAGTAGGCCAGGGAGCAAAGCTTGCCGTGAGAAATTGCGCAGA
GAGAGATTAAATGACAGGTTTCTTGATTTGAGTTGTATTTTGGAACCTGG
GAGACCAGCTAGAACTGATAAACCGGCCATACTTGATGATGCGATTAGGG
TGTTAAATCAACTAAGAACTGAGTCTCAGGAGCTCAAAGAAACTAATGAG
AAGCTGCAAGAAGAAATTAAAAGTTTGAAGGCTGAGAAGAATGAACTTCG
TGAAGAGAAACTTATACTGAAGGCGGATAAAGAAAAGTTAGAGCAGCAGT
TGAAAGTTATGGCCATGCCAACAGGTGGTTATATGCCAACCCACCCAGCG
GCTTATCATGCTGGGTTGAATAAGATGGCGGTATATCCCAGTTATGGTTT
GATGCCTATGTGGCAATATTTACCTCCA
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