CX292096

Overview
NameCX292096
Unique NameCX292096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14477 contig Ccv1_Contig14477:169..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.942e-29
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 183
            N PC VFKTD+YCCNSGNCG T FSKFFKDRCPD YSYPKDD TSTFTCP GT+YKVVFCP
Sbjct:  165 NNPCTVFKTDQYCCNSGNCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFCP 225          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.689e-26
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 183
            N PC VFKTD+YCCNSG+CGPT +S+FFK RCPD YSYPKDD  STFTC  GTDY+VVFCP
Sbjct:  142 NNPCTVFKTDQYCCNSGSCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFCP 202          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: IAAT_MAIZE (Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.238e-23
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCC---NSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 183
            N  CPVFK DEYCC    + NC PT +S++FK +CPD YSYPKDDATSTFTCP GT+YKVVFCP
Sbjct:  143 NNACPVFKKDEYCCVGSAANNCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.512e-23
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCCNSG--NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 183
            N PC V KT+EYCC +G  +CGPT  S+FFK+RCPD YSYP+DD TS FTCP+GT+Y+VVFCP
Sbjct:  164 NNPCTVIKTNEYCCTNGPGSCGPTDLSRFFKERCPDAYSYPQDDPTSLFTCPSGTNYRVVFCP 226          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.505e-23
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCC---NSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 183
            N  CPVFK DEYCC    + +C PT +S++FK +CPD YSYPKDDATSTFTCP GT+YKVVFCP
Sbjct:  164 NNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.604e-21
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 183
            N PC  F   +YCC  G CGPT FSKFFK RCPD YSYP+DD TSTFTCP G T+Y+V+FCP
Sbjct:  165 NNPCTTFGGQQYCCTQGPCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 226          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.736e-21
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 183
            N PC  F   +YCC  G CGPT  SKFFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:  165 NNPCTTFGGQQYCCTQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.573e-21
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 183
            N PC  F   +YCC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:  157 NNPCTTFGGQQYCCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 218          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.573e-21
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 183
            N PC  F   +YCC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:  165 NNPCTTFGGQQYCCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 NGPCPVFKTDEYCCNSG--NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 183
            N PC V KT+E+CC +G  +CGPT  S+FFK RCPD YSYP+DD  S FTCP GT+Y+VVFCP
Sbjct:  164 NNPCTVIKTNEFCCTNGPGSCGPTDLSRFFKARCPDAYSYPQDDPPSLFTCPPGTNYRVVFCP 226          
The following BLAST results are available for this feature:
BLAST of CX292096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP_ACTDE7.942e-2985.25Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
P21_SOYBN3.689e-2677.05Protein P21 OS=Glycine max PE=1 SV=1[more]
IAAT_MAIZE2.238e-2370.31Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 S... [more]
PRR1_TOBAC6.512e-2368.25Pathogenesis-related protein R major form OS=Nicot... [more]
ZEAM_MAIZE8.505e-2368.75Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2[more]
OSMO_TOBAC1.604e-2167.74Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
OS81_SOLCO2.736e-2167.74Osmotin-like protein OSML81 OS=Solanum commersonii... [more]
TPM1_SOLLC3.573e-2166.13Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
OS13_SOLCO3.573e-2166.13Osmotin-like protein OSML13 OS=Solanum commersonii... [more]
PRR2_TOBAC4.667e-2165.08Pathogenesis-related protein R minor form OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionC04010D12SK FlavFr1 Citrus clementina cDNA clone C04010D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292096 ID=CX292096; Name=CX292096; organism=Citrus clementina; type=EST; length=416bp
AACGGGCCGTGCCCCGTGTTCAAGACCGACGAGTACTGTTGCAATTCAGG
CAACTGCGGACCTACAGGTTTCTCCAAGTTTTTCAAGGATAGGTGCCCGG
ATGTTTACAGTTACCCTAAGGATGACGCTACCAGCACATTTACTTGCCCG
ACTGGGACAGACTACAAGGTTGTATTCTGCCCCTGAAGCATTTTTTTTCA
GGGGTAGAAATGGAAATAGAAAACTATACGACATAGCCTTCTATATCTGT
TATAATATTGGAATAAGGACCGTGTGGTCTTCACTGCCATAGAGCTGGAG
CAGGCACATGTAGTTATGTGCGTGTATGAACTATAATTTGTTCGTGAATT
AAAAGGAGAATAACTGAAATTTTATGGGGCTTCTTTAAAAAAACAAAAAA
AAAAAAATAAAAGTTT
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