CX292106

Overview
NameCX292106
Unique NameCX292106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length246
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292106_ssr1 microsatellite CX292106_ssr1:1..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX292106 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.965e-13
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   72 LKEKFEGLYEEHKXXXXXXXXXXXXXXRVVHSPCCVVTGEYGWTAYMERIMKAQALRD 245
            LKEKFEGL +  K              RVV SPCC+VTGEYGWTA MERIMKAQALRD
Sbjct:  535 LKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD 592
[Close]
BLAST of CX292106 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   72 LKEKFEGLYEEHKXXXXXXXXXXXXXXRVVHSPCCVVTGEYGWTAYMERIMKAQALRD 245
            LKEKFEGL +  K              RVV SPCC+VTGEYGWTA MERIMKAQALRD
Sbjct:  537 LKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD 594
[Close]
BLAST of CX292106 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   72 LKEKFEGLYEEHKXXXXXXXXXXXXXXRVVHSPCCVVTGEYGWTAYMERIMKAQALRD 245
            LKEKFEGL +  K              RVV SPCC+VTGEYGWTA MERIMKAQALRD
Sbjct:  535 LKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD 592
[Close]
BLAST of CX292106 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   72 LKEKFEGLYEEHKXXXXXXXXXXXXXXRVVHSPCCVVTGEYGWTAYMERIMKAQALRD 245
            LKEKFEGL +  K              RVV SPCC+VTGEYGWTA MERIMKAQALRD
Sbjct:  537 LKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD 594
[Close]
BLAST of CX292106 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   72 LKEKFEGLYEEHKXXXXXXXXXXXXXXRVVHSPCCVVTGEYGWTAYMERIMKAQALRD 245
            LKEKFEGL +  K              RVV SPCC+VTGEYGWTA MERIMKAQALRD
Sbjct:  535 LKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD 592
[Close]
BLAST of CX292106 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   72 LKEKFEGLYEEHKXXXXXXXXXXXXXXRVVHSPCCVVTGEYGWTAYMERIMKAQALRD 245
            LKEKFEGL +  K              RVV SPCC+VTGEYGWTA MERIMKAQALRD
Sbjct:  537 LKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD 594
[Close]
BLAST of CX292106 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   72 LKEKFEGLYEEHKXXXXXXXXXXXXXXRVVHSPCCVVTGEYGWTAYMERIMKAQALRD 245
            LKEKFEGL +  K              RVV SPCC+VTGEYGWTA MERIMKAQALRD
Sbjct:  537 LKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD 594
The following BLAST results are available for this feature:
BLAST of CX292106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HSP80_SOLLC7.965e-1363.79Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP83_ORYSJ1.040e-1263.79Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP83_ARATH1.040e-1263.79Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP82_ORYSJ1.040e-1263.79Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP82_ARATH1.040e-1263.79Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP81_ORYSJ1.040e-1263.79Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI1.040e-1263.79Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
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Properties
Property NameValue
Genbank descriptionC04010E10SK FlavFr1 Citrus clementina cDNA clone C04010E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292106 ID=CX292106; Name=CX292106; organism=Citrus clementina; type=EST; length=246bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCCCTCGC
GCCGAATTCGGCACGAGGACCTTGAAGGAGAAATTTGAGGGTCTCTACGA
AGAGCACAAAGATGTTGTGGGTGACAACGTCGAGAAGGTTGTGGTGTCTG
ACCGTGTTGTTCACTCACCTTGCTGTGTGGTGACTGGTGAGTACGGATGG
ACCGCCTACATGGAGAGGATCATGAAGGCTCAGGCCTTGAGAGACC
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