CX292115

Overview
NameCX292115
Unique NameCX292115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11435 contig Ccv1_Contig11435:36..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 53/171 (30.99%), Postives = 84/171 (49.12%), Query Frame = 3
Query:   69 RGTTQSKISSSVLLLETEMAGASVRLDLDGR-PIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            RG     +S + L  E  +   S  LD + R P +   + ++G  GFIG+HL E++L +  + I  +D+ +D I+        H +E +     + I++H             IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  283 RGDNGLYLSGAQLAREFGLVEGSQLLDTEKRRPARRTRVLILGVNGFIGNHLSERLLQDDRYDIYGMDIGSDAIERLRTKPNFHFIEGDISIHTEWIEYH-------------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG 440          
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 52/171 (30.41%), Postives = 83/171 (48.54%), Query Frame = 3
Query:   69 RGTTQSKISSSVLLLETEMAGASVRLD-LDGRPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            RG     +S   L  E  +   S  LD    R ++   + ++G  GFIG+HL E++L +  ++I  +D+ +D I+        H +E +     + I++H             IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  284 RGDNGLYLSGEQLAREFGLVAGSQMLDKAKRRSVRRTRVLILGVNGFIGNHLSERLLQDDRYEIYGMDIGSDAIERLRAKPNFHFIEGDISIHTEWIEYH-------------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG 441          
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  129 GASVRLDLDGRPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            G+ +R    GR  +   + ++G  GFIG+HL E++L +  +++  LD+ +D I  L          R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  304 GSLLRGAESGRGPRRTRVLILGVNGFIGNHLSERLLRDERYEVYGLDIGSDAIDRL------RSHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG 440          
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 47/150 (31.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  129 GASVRLDLDGRPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            G+ +R    GR  +   + ++G  GFIG+HL E++L +  + +  LD+ +D I+        H +E +    ++ I++H             IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  304 GSLLRGAESGRKPRRTRVLILGVNGFIGNHLSERLLRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIHSEWIEYH-------------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG 440          
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 47/150 (31.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  129 GASVRLDLDGRPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            G+ +R    GR  +   + ++G  GFIG+HL E++L +  +++  LD+ +D I+        H +E +     + I++H             IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  304 GSVLRGAESGRKPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIERLRSHPNFHYVEGDISIHTEWIEYH-------------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG 440          
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  180 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   LE      + R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C + NKR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLE------SPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYG 437          
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  180 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   L      G  R  F   +I  H+  +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C   NKR++  ST EVYG
Sbjct:  324 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG 443          
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  180 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   L      G  R  F   +I  H+  +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C   NKR++  ST EVYG
Sbjct:  325 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG 444          
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 46/126 (36.51%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  180 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            + ++G  GFIG+HL E++L +  + I  LD+ +D I   L      G  R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLRDDRYDIYGLDIGSDAISRFL------GNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYG 437          
BLAST of CX292115 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  180 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 554
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   L+        R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C + NKR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLD------CPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYG 437          
The following BLAST results are available for this feature:
BLAST of CX292115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_PSE147.208e-1630.99Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEU21.606e-1530.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEPF7.969e-1534.27Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEF51.041e-1431.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEFS1.359e-1431.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP32.319e-1435.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PECCP5.165e-1435.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT5.165e-1435.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP56.746e-1436.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP76.746e-1434.92Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC04010F08SK FlavFr1 Citrus clementina cDNA clone C04010F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292115 ID=CX292115; Name=CX292115; organism=Citrus clementina; type=EST; length=557bp
TCTCTCTACCCTACATACCCGGTGCACGTTAGTATCCACCTCACCAAAGA
CAACGCATTTTCAATTCGCGTGGAACGACACAAAGCAAAATCTCAAGTTC
AGTTTTACTTCTGGAAACGGAAATGGCAGGCGCAAGCGTGAGATTGGATC
TGGACGGGAGGCCGATTAAGCCGGTGACGATATGCATGATCGGCGCCGGC
GGCTTCATCGGCTCTCATCTCTGCGAAAAGATTCTCCTTGAGACCCCTCA
CAAAATTCTAGCACTCGACGTCTACAATGACAAGATCAAGCACTTGCTCG
AACCGGAGTCACAGACTGGGGCCGACCGGATCCAGTTCCACCGACTCAAC
ATCAAGCACGATTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTGAC
GATAAATCTGGCGGCGATCTGTACGCCGGCGGATTACAACACGCGGCCGT
TGGACACGATCTACAGCAACTTTATTGACGCGCTTCCGGTGGTCAAGTAC
TGTTCGGAGAACAACAAGCGTTTGATTCACTTCTCTACTTGTGAAGTATA
TGGAAAG
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