CX292116

Overview
NameCX292116
Unique NameCX292116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig927 contig Ccv1_Contig927:292..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292116 vs. ExPASy Swiss-Prot
Match: VATO_SCHPO (Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe GN=vma16 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.835e-22
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 FCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAS 315
            FCE               K+  +  +  Y       G+A+F  GI VG  NL+CG+CVGI GSS AL+DAQ++SLFVK+LV+EIFGS LGLFG+IVG+++  +AS
Sbjct:   92 FCEVVAIYSLIIAIVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLLIGGKAS 196          
BLAST of CX292116 vs. ExPASy Swiss-Prot
Match: VATO_YEAST (V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae GN=PPA1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 FCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAS 315
            FCE              +KL    A  +Y+  +L  GY++F +GI VG +NL+CG+ VGI G++ A+SDA +S+LFVKILVIEIFGS LGL G+IVG++M+ +AS
Sbjct:  106 FCEVVAIYGLIIAIVFSSKLTVATAENMYSKSNLYTGYSLFWAGITVGASNLICGIAVGITGATAAISDAADSALFVKILVIEIFGSILGLLGLIVGLLMAGKAS 210          
BLAST of CX292116 vs. ExPASy Swiss-Prot
Match: VATO_MOUSE (V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0b PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.007e-20
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 FCEXXXXXXXXXXXXLQTKLESVPASQIYA--PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQ 309
            FCE            +    E   A++  A    +  AGY++F +G+ VG +NL CG+CVGI+GS  AL+DAQN SLFVKIL++EIFGSA+GLFGVIV I+ +++
Sbjct:   96 FCEAVAIYGIIMAIVISNMAEPFSATEPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSR 200          
BLAST of CX292116 vs. ExPASy Swiss-Prot
Match: VATO_HUMAN (V-type proton ATPase 21 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0B PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 1
Query:  106 AGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQ 309
            AGY++F +G+ VG +NL CG+CVGI+GS  AL+DAQN SLFVKIL++EIFGSA+GLFGVIV I+ +++
Sbjct:  133 AGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSR 200          
BLAST of CX292116 vs. ExPASy Swiss-Prot
Match: VATO_BOVIN (V-type proton ATPase 21 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0B PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 1
Query:  106 AGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQ 309
            AGY++F +G+ VG +NL CG+CVGI+GS  AL+DAQN SLFVKIL++EIFGSA+GLFGVIV I+ +++
Sbjct:  133 AGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSR 200          
BLAST of CX292116 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   91 PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQA 312
            P  L  GYA  +SG+  G A L  G+ +GI+G +   ++AQ   LFV +++I IF  AL L+G+IVGII+S++A
Sbjct:   86 PYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159          
BLAST of CX292116 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   91 PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQA 312
            P  L  GYA  +SG+  G A L  G+ +GI+G +   ++AQ   LFV +++I IF  AL L+G+IVGII+S++A
Sbjct:   86 PYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159          
BLAST of CX292116 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   91 PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQA 312
            P  L  GYA  +SG+  G A L  G+ +GI+G +   ++AQ   LFV +++I IF  AL L+G+IVGII+S++A
Sbjct:   30 PYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 103          
BLAST of CX292116 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   91 PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQA 312
            P  L  GYA  +SG+  G A L  G+ +GI+G +   ++AQ   LFV +++I IF  AL L+G+IVGII+S++A
Sbjct:   86 PYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159          
The following BLAST results are available for this feature:
BLAST of CX292116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
VATO_SCHPO1.835e-2247.62Probable V-type proton ATPase 20 kDa proteolipid s... [more]
VATO_YEAST6.972e-2248.57V-type proton ATPase subunit c'' OS=Saccharomyces ... [more]
VATO_MOUSE1.007e-2047.62V-type proton ATPase 21 kDa proteolipid subunit OS... [more]
VATO_HUMAN1.315e-2064.71V-type proton ATPase 21 kDa proteolipid subunit OS... [more]
VATO_BOVIN1.315e-2064.71V-type proton ATPase 21 kDa proteolipid subunit OS... [more]
VATL_ORYSJ9.445e-1144.59V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSI9.445e-1144.59V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE9.445e-1144.59V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_AVESA9.445e-1144.59V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
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Properties
Property NameValue
Genbank descriptionC04010F09SK FlavFr1 Citrus clementina cDNA clone C04010F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292116 ID=CX292116; Name=CX292116; organism=Citrus clementina; type=EST; length=501bp
TTTTGTGAAGCTGTTGCTATATATGGGGTCATTGTTGCAATTATTTTACA
AACAAAGCTAGAAAGTGTTCCGGCATCACAGATATATGCACCAGAATCAC
TAAGAGCTGGATATGCCATCTTTGCCTCTGGGATCATCGTGGGCTTTGCT
AACCTAGTTTGTGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATT
GTCTGATGCCCAAAACTCGTCCTTGTTTGTGAAGATTTTGGTGATTGAGA
TCTTTGGTAGTGCTCTTGGGTTGTTTGGAGTGATTGTTGGAATAATTATG
TCAGCTCAAGCATCATGGCCTGCAAAACCAGTGTAATTTGATCTTCTTTA
TTCTTTTGGGGAATTCAACTGTGGCAGCATGCACTTTATTTTGTGTACTT
CAGCTGCGCTCTTTATCTTGTTGCTTTATAATTTTCACTAGCAGGGATGT
ATAAACTGGTGTGGACATGCTCTTTCTTTCAGCTTAGGCCTTGGATGTTT
C
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