CX292119

Overview
NameCX292119
Unique NameCX292119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292119_ssr408 microsatellite CX292119_ssr408:408..422. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14767 contig Ccv1_Contig14767:86..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 4.905e-66
Identity = 129/172 (75.00%), Postives = 133/172 (77.33%), Query Frame = 1
Query:    1 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFL 516
            MAM RVAS+A  A                      KKIVGVFYK NEYA MNPNFLGC E   G+REWLESKGHQYIVT DKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAG+GSDH+DL      GLTVAEVTGSN VSVAEDELMRILILVRNFL
Sbjct:    1 MAMSRVASTAARAITSPSSLVFTRELQASPGP---KKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFL 169          
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.864e-65
Identity = 124/172 (72.09%), Postives = 136/172 (79.07%), Query Frame = 1
Query:    1 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFL 516
            MAM++ A + I A +                    KKIVGVFYK NEYA+ NPNFLGCVE   G+R+WLES+GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSNVVSVAEDELMRILIL+RNF+
Sbjct:    1 MAMRQAAKATIRACSSSSSSGYFARRQFNASSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFV 172          
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 8.959e-60
Identity = 112/137 (81.75%), Postives = 121/137 (88.32%), Query Frame = 1
Query:  106 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFL 516
            KKIVGVFYKG EYA  NPNF+GCVEG  G+REWLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYV+AERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSN VSVAEDELMRILIL+RNFL
Sbjct:   28 KKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMRILILLRNFL 164          
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.690e-58
Identity = 107/137 (78.10%), Postives = 120/137 (87.59%), Query Frame = 1
Query:  106 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFL 516
            KK+VGVFYKG EYA  NPNF+GCV+   G+R WLESKGH+YIVTDDKEG +CELEKHI D HVLI+TPFHPAY+TAERIKKAKNL+LLLTAGVGSDHIDL      GLTVAE+TGSN VSVAED+LMRIL+L+RNFL
Sbjct:   30 KKVVGVFYKGGEYADKNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILLLLRNFL 166          
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.523e-56
Identity = 106/137 (77.37%), Postives = 117/137 (85.40%), Query Frame = 1
Query:  106 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFL 516
            KKIVGVFY+  EYA  NPNF+GCVEG  G+R+WLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYVTAE+IKKAK  +LLLTAG+GSDHIDL      GLTVA VTGSN VSVAEDELMRILIL+RNFL
Sbjct:   29 KKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRNFL 165          
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 8.160e-37
Identity = 77/138 (55.80%), Postives = 97/138 (70.29%), Query Frame = 1
Query:  109 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXG--LTVAEVTGSNVVSVAEDELMRILILVRNFL 516
            K+V V Y   ++A       GC E   G+R+WLE +GH  +VT DKEG +  LEK+I D  V+ISTPFHPAY+T ERI KAK L+LL+ AGVGSDHIDL+     G  ++V EVTGSNVVSVAE  +M +L+LVRNF+
Sbjct:    2 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDADVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHIDLDYINQSGRDISVLEVTGSNVVSVAEHVVMTMLVLVRNFV 139          
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.908e-36
Identity = 71/138 (51.45%), Postives = 97/138 (70.29%), Query Frame = 1
Query:  109 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFL 516
            K++ V Y G ++    P  LG ++   GLR+WLE +GH  + T DK+G +   +K + D  ++I+TPFHP Y+TAER+ +AK L+L +TAG+GSDH+DLN       G+TVAEVTGSNVVSVAE  LM IL+LVRNF+
Sbjct:    3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDAEIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVDLNAANKTNGGITVAEVTGSNVVSVAEHVLMTILVLVRNFV 140          
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.625e-35
Identity = 71/134 (52.99%), Postives = 94/134 (70.15%), Query Frame = 1
Query:  121 VFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFL 516
            V Y G  +A   P  LG  E   G+R+W+E +GH  + T DK+G +   +K + D  V+I+TPFHP Y+TAER+ KAKNL+L +TAG+GSDH+DL+       G+TVAEVTGSNVVSVAE  +M IL+LVRNF+
Sbjct:    2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVIITTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTGSNVVSVAEHVVMTILLLVRNFV 135          
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH_PSESR (Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 6.691e-31
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  166 LGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFL 516
            LG V G  GLR++LES GH  +VT DK+GPD   E+ + D  V+IS PF PAY+T ERI KAKNL+L LTAG+GSDH+DL       +TVAEVT  N +SVAE  +M IL LVRN+L
Sbjct:   51 LGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYL 167          
BLAST of CX292119 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.671e-29
Identity = 60/136 (44.12%), Postives = 92/136 (67.65%), Query Frame = 1
Query:  109 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNF 513
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNY 140          
The following BLAST results are available for this feature:
BLAST of CX292119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FDH_SOLTU4.905e-6675.00Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH_ARATH1.864e-6572.09Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH1_ORYSJ8.959e-6081.75Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH2_ORYSJ1.690e-5878.10Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_HORVU3.523e-5677.37Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_PICAN8.160e-3755.80Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH_NEUCR6.908e-3651.45Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH_EMENI2.625e-3552.99Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_PSESR6.691e-3158.12Formate dehydrogenase OS=Pseudomonas sp. (strain 1... [more]
FDH2_YEAST3.671e-2944.12Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC04010G01SK FlavFr1 Citrus clementina cDNA clone C04010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292119 ID=CX292119; Name=CX292119; organism=Citrus clementina; type=EST; length=517bp
ATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTTTTGCTTCGTC
GGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTATGCTTCTTCTG
GAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGAATACGCTTCA
ATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTGGTCTGCGTGA
ATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGATGACAAAGAGG
GACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCACGTCCTCATA
TCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGATTAAGAAGGC
CAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCTGATCATATTG
ATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGAAGTTACTGGA
AGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAATCCTTATTCT
TGTCCGTAATTTCTTAC
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