CX292120

Overview
NameCX292120
Unique NameCX292120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:77..421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292120 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.960e-24
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   21 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVHAAEAEGNCKCGPTCACVNCTCG 218
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CX292120 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.656e-19
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 3
Query:   30 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVHAAEAEGNCKCGPTCACVNCTCGS 221
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V    AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CX292120 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.656e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   21 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVHAAEAEGNCKCGPTCACVNCTC 215
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CX292120 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.540e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   21 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVHAAEAEGNCKCGPTCACVNCTC 215
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CX292120 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.540e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   21 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVHAAEAEGNCKCGPTCACVNCTCG 218
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CX292120 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.853e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   21 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVHAAEAEGNCKCGPTCACVNCTCG 218
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX292120 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.853e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   21 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVHAAEAEGNCKCGPTCACVNCTCG 218
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX292120 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.154e-14
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   21 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVHAAEAEGNCKCGPTCACVNCTCG 218
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CX292120 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   21 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVHAAEAEGNCKCGPTCACVNCTCG 218
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CX292120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA9.960e-2469.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC5.656e-1960.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE5.656e-1967.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV1.540e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.540e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ5.853e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI5.853e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ7.154e-1450.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI2.719e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC04010G02SK FlavFr1 Citrus clementina cDNA clone C04010G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292120 ID=CX292120; Name=CX292120; organism=Citrus clementina; type=EST; length=345bp
AAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGC
GCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTT
CGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTC
ACGCTGCTGAGGCTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGT
GTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAAAAA
ATAAGAAGCTGCAGGTGTGCCTAAATATTGTGGGGGTTAAGAATAATGTA
AGGGTGATTAAAAAAAAAAAAAAAAAACTGGGGGGGGGGCCCGGA
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