CX292122

Overview
NameCX292122
Unique NameCX292122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length257
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11747 contig Ccv1_Contig11747:724..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 5.086e-31
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 1
Query:    1 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 222
            ATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++IRNLHHVLGG LNPNAAYLIIRGMKTLHLR
Sbjct:  358 ATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLR 431          
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.636e-14
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    4 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 222
            TP  Q+ L LGADLV+HSATK++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct:  191 TPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265          
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.259e-13
Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 222
            ATP  Q+ ++LGAD+VLHSATK++GGH+DV+AG ++ + K L ++I  L + +G  L P  ++L+ RG+KTL LR
Sbjct:  175 ATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALR 249          
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.259e-13
Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 222
            ATP  Q+ ++LGAD+VLHSATK++GGH+DV+AG ++ + K L ++I  L + +G  L P  ++L+ RG+KTL LR
Sbjct:  175 ATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALR 249          
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METB_HERAU (Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.147e-13
Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRASNDQ 237
            A+P NQ+ ++LGAD+VLHS TK+IGGH+DV+ G+I + + +L  +++ L +  G    P   +L++RG+KTL +R  +D+
Sbjct:  176 ASPYNQRPITLGADMVLHSTTKYIGGHSDVVGGAIMTSNDELYEKLKFLQNAAGAVPGPFDCWLVLRGVKTLSIRMRDDE 255          
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.065e-12
Identity = 35/72 (48.61%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL 213
            ATP  Q+ ++LGAD+VLHSATK++GGH+DV+AG + + S +L  +I  L + +G  L P  ++L+ RG+KTL
Sbjct:  175 ATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDSWLVQRGIKTL 246          
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    4 TPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 222
            TP  Q+ L+LGAD+VLHSATK++GGH+DV+ G  ++ S +L  ++  + +  GG L P  ++L++RG+KTL LR
Sbjct:  175 TPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNSTGGVLGPQDSWLLMRGIKTLGLR 248          
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.373e-12
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRASNDQ 237
            ATP  Q  L LGAD+V HS TK++GGH+DV+AG ++ + + L  +I    + +GG L P  ++L+ RG+KTL LR    Q
Sbjct:  174 ATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQ 253          
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METB_BACSU (Cystathionine gamma-synthase OS=Bacillus subtilis GN=metB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.100e-12
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    4 TPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRASNDQ 237
            TP+ Q+ L LGAD+V+HSATK++GGHND+LAG  +    +L  ++    + +G  L P  ++L++RGMKTL LR    Q
Sbjct:  177 TPVLQRPLELGADIVIHSATKYLGGHNDLLAGLVVVKDERLGEEMFQHQNAIGAVLPPFDSWLLMRGMKTLSLRMRQHQ 255          
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METB_HAEIN (Cystathionine gamma-synthase OS=Haemophilus influenzae GN=metB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.288e-12
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    4 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRASNDQ 237
            TP+  + L LGAD+V+HS TK+I GHND L G I   G +L  +I  + +  G  L+P  ++L IRGMKTL LR    Q
Sbjct:  180 TPVLSRPLDLGADVVIHSGTKYIAGHNDALVGLIVAKGQELCDRIAYIQNGAGAVLSPFDSWLTIRGMKTLSLRMKRHQ 258          
The following BLAST results are available for this feature:
BLAST of CX292122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
METB_ARATH5.086e-3187.84Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
MEGL_PSEPU9.636e-1452.00Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
METC_LACLM1.259e-1349.33Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA1.259e-1349.33Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METB_HERAU2.147e-1342.50Probable cystathionine gamma-synthase (Fragment) O... [more]
METC_LACLC1.065e-1248.61Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
MCCB_BACSU1.391e-1247.30Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
METB_HELPY2.373e-1245.00Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
METB_BACSU3.100e-1245.57Cystathionine gamma-synthase OS=Bacillus subtilis ... [more]
METB_HAEIN5.288e-1246.84Cystathionine gamma-synthase OS=Haemophilus influe... [more]

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Properties
Property NameValue
Genbank descriptionC04010G06SK FlavFr1 Citrus clementina cDNA clone C04010G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292122 ID=CX292122; Name=CX292122; organism=Citrus clementina; type=EST; length=257bp
GCCACACCTCTCAATCAGAAGGCCCTCAGCCTTGGTGCTGATCTTGTCCT
GCACTCTGCAACAAAATTCATTGGTGGCCACAATGATGTCCTTGCTGGGA
GCATTAGTGGTTCAGGGAAGTTAGTTACACAAATTCGTAATTTGCATCAT
GTTTTGGGTGGTGCTCTCAACCCGAATGCCGCATATTTGATCATTCGAGG
CATGAAGACATTGCATCTTCGTGCCTCAAATGATCAAATATGCGGCATTG
GGGGCAT
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