CX292133

Overview
NameCX292133
Unique NameCX292133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX292133 vs. ExPASy Swiss-Prot
Match: SKI16_ARATH (F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.524e-60
Identity = 113/201 (56.22%), Postives = 144/201 (71.64%), Query Frame = 3 
Query:    6 HLVNVYLIPLSHIIMETKE-IRRHLDFPSRDKYVVVASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASSVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVV 605
            H VNVYL+PL  ++ ETKE   R L F SR   +V+A+S   S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD MLLWLEEHGRRL  G I +R + N+K I+LFPE PPLCS++VTNGV++RASSVFIPE+++       Y +AYSIRMSL+PEGC++NG   SSCQL  RHW+I A+N V+
Sbjct:  168 HDVNVYLLPLKEVMRETKESFMRDLGFSSRLDLIVMAASVVASLKIFLLDCTTGQLFTGTSNR----QLLPCVPDALVRSVHDTNGDQQQDAMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIPEISNLRDQPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVI 364
The following BLAST results are available for this feature:
BLAST of CX292133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI16_ARATH7.524e-6056.22F-box protein SKIP16 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionC04010H07SK FlavFr1 Citrus clementina cDNA clone C04010H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292133 ID=CX292133; Name=CX292133; organism=Citrus clementina; type=EST; length=609bp
GTGGGCATCTGGTAAATGTATACTTGATACCTTTGAGTCACATTATTATG
GAAACAAAGGAGATCAGACGCCACTTGGATTTTCCCAGCAGAGATAAATA
TGTGGTTGTGGCCTCTTCTTCCACATATAGTGAAAAGTTTTTCTTCCTCA
ATTGTACCAATGGCCAACTATATGTTGGTACCAAGAATCTTCTGTCAGAT
GGAGAAATGATTCCATGTGTACCAAACGCACTGATAGCCTTGGGGCATGG
CTGTAACAGTGATCAACAGCAGGATGGTATGCTGCTATGGTTAGAAGAAC
ATGGCCGTCGCTTACATAATGGCATTATCAGACTTCGTGATGAAGAAAAT
CTCAAATTTATTAATCTTTTTCCTGAGGAACCTCCCCTCTGCTCGATTGC
TGTAACCAATGGTGTGAAGATTCGTGCCTCTTCTGTATTTATTCCGGAGT
TGGCTGACCCTGAAAGTGACACCGAGAAGTACTTGTTTGCTTATTCAATT
CGCATGTCTCTACTGCCTGAAGGATGCGTCATAAATGGAATGACTTTCAG
CTCTTGTCAACTGCAACGTAGGCATTGGATAATCCATGCTAATAATGTTG
TCGTATCTG
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