CX292135

Overview
NameCX292135
Unique NameCX292135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig401 contig Ccv1_Contig401:1..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4974_RICCO (UPF0497 membrane protein 4 OS=Ricinus communis GN=RCOM_0679870 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.246e-48
Identity = 92/150 (61.33%), Postives = 112/150 (74.67%), Query Frame = 3
Query:   54 VRENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIP-IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSATGV 500
            +R +YF +DVGLRV LFA TL +++VM+TAKQTEL   PG+P +RV V+AKF  SPAFIYFVAALSVACLYSIIT LASL V++KP  A + L Y+A WDV+ML              YIGLKGN H+RWTKICNVYD +C+H+GSA  +
Sbjct:   25 LRRDYFAVDVGLRVFLFATTLTAIVVMSTAKQTELAPVPGVPGLRVPVEAKFNHSPAFIYFVAALSVACLYSIITTLASLGVIAKPIYATKFLFYYALWDVLMLGIVAAATGAAGGVAYIGLKGNSHTRWTKICNVYDTFCKHVGSALAI 174          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497F_VITVI (UPF0497 membrane protein 15 OS=Vitis vinifera GN=GSVIVT00019814001 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.784e-37
Identity = 74/145 (51.03%), Postives = 97/145 (66.90%), Query Frame = 3
Query:   66 YFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSATGV 500
            Y  +DV LR+LL  + + SV+VM T+ QT+L+   G+P+ VS KAKF +SPAFIYFVAALSV  LYSIIT LAS   +SKP+ + + +L+ A WDV+ML              Y+GLKGN H  W K+CN YDK+CRH+G +  V
Sbjct:   39 YSALDVVLRILLLGSAVASVVVMVTSVQTKLIAVAGVPVLVSNKAKFQNSPAFIYFVAALSVVGLYSIITTLASFIFISKPSCSTKTILHLAIWDVLMLGLAASATGTAGGVAYVGLKGNSHVGWNKVCNTYDKFCRHVGGSIAV 183          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4972_MUSAC (UPF0497 membrane protein 2 OS=Musa acuminata GN=MA4_106O17.52 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.857e-35
Identity = 70/149 (46.98%), Postives = 95/149 (63.76%), Query Frame = 3
Query:   63 NYFGIDVGLRVLLFAATLVSVIVMATAKQTELVT---PPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSATGV 500
            N FG+D GLR+LL A+ + +++V+ T+KQTE +    PP  P  +S  AKF  SPAFIY + ALSV C YSIITM+AS + ++ P+S+ R+L +    D VM               Y+GLKGN H  W K+CNVYDK+CRH+GS+  V
Sbjct:   19 NLFGVDFGLRLLLLASAVSALVVLVTSKQTESIPTSLPPPFPAFISRDAKFQHSPAFIYLLVALSVTCFYSIITMVASFAAITSPSSSPRMLFHLVLSDAVMAGVMASAAGTAGSVAYLGLKGNSHVNWNKVCNVYDKFCRHVGSSAAV 167          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497C_SOYBN (UPF0497 membrane protein 12 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.160e-34
Identity = 78/147 (53.06%), Postives = 97/147 (65.99%), Query Frame = 3
Query:   63 NYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDH-SRWTKICNVYDKYCRHIGSATGV 500
            +YF  DV LR LLFAA+LV+V+V+ TA QTE++    +P  V   AKF  SPAF+YFVAALSV  LYSIIT LASL   +KPA   +LLLYF  WD ++L              Y+GLKGN H   W KIC+VYDK+CRH+G++  V
Sbjct:   25 DYFKFDVILRFLLFAASLVAVVVIVTANQTEVIR---VPQPVPWPAKFRYSPAFVYFVAALSVTGLYSIITTLASLLASNKPALKTKLLLYFILWDALILGIIASATGTAGGVAYLGLKGNRHVVGWNKICHVYDKFCRHVGASIAV 168          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497D_SOYBN (UPF0497 membrane protein 13 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.026e-32
Identity = 74/147 (50.34%), Postives = 95/147 (64.63%), Query Frame = 3
Query:   63 NYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDH-SRWTKICNVYDKYCRHIGSATGV 500
            +YF  DV LR +LFAA+LV+V+V+ T  QTE++    +P  V   AKF  +PAF+YFVAALSV  LYSIIT LASL   +KPA   +LL YF  WD ++L              Y+GLKGN H   W KIC+VYDK+CRH+G++  V
Sbjct:   25 DYFKFDVILRFVLFAASLVAVVVIVTGNQTEVIL---VPQPVPWPAKFRYTPAFVYFVAALSVTGLYSIITTLASLFASNKPALKTKLLPYFILWDALILGIIASATGTAGGVAYLGLKGNSHVVGWNKICHVYDKFCRHVGASIAV 168          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497P_ARATH (UPF0497 membrane protein At4g15610 OS=Arabidopsis thaliana GN=At4g15610 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.495e-31
Identity = 69/140 (49.29%), Postives = 90/140 (64.29%), Query Frame = 3
Query:   81 VGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSATGV 500
            V LR +LFAATL S++VM T+KQT+ +  PG PIR+   A+FT+SPA IYFV ALSVAC YSI++   ++S   K + +  LLL  A  D VM+              Y+GLKGN   RW KIC++YDK+CRH+G A  V
Sbjct:   31 VVLRFVLFAATLTSIVVMVTSKQTKNIFLPGTPIRIPA-AEFTNSPALIYFVVALSVACFYSIVSTFVTVSAFKKHSCSAVLLLNLAIMDAVMVGIVASATGAGGGVAYLGLKGNKEVRWGKICHIYDKFCRHVGGAIAV 169          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497F_ARATH (UPF0497 membrane protein At3g06390 OS=Arabidopsis thaliana GN=At3g06390 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.025e-30
Identity = 66/139 (47.48%), Postives = 88/139 (63.31%), Query Frame = 3
Query:   75 IDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            ID+  RVLLF+ATL ++IVM T+ QTE+   PG+     V A+F DSPAFIYFV AL VA  Y++I+ L S+S++ KP    +  +Y A  D+VML              YI LKGN+   W KICNVYDK+CR+I ++
Sbjct:   37 IDIITRVLLFSATLTALIVMVTSDQTEMTQLPGVSSPAPVSAEFNDSPAFIYFVVALVVASFYALISTLVSISLLLKPEFTAQFSIYLASLDMVMLGILASATGTAGGVAYIALKGNEEVGWNKICNVYDKFCRYIATS 175          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497_IPONI (UPF0497 membrane protein In26 (Fragment) OS=Ipomoea nil GN=IN26 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.581e-28
Identity = 70/152 (46.05%), Postives = 94/152 (61.84%), Query Frame = 3
Query:   57 RENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVT---PPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASL-SVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSATGV 500
            +E Y   +  LR+LL A+ +V+V+VM T+K+TEL++    P  P  + + AKFT SPAFIYFVA LSVA LY+II+ LAS  +++ KP     L+ +F   DVVML              YIGLKGN H  WTK+CN Y K C H+G++  V
Sbjct:   19 KEYYKVTEAILRLLLLASLVVAVVVMVTSKETELISVKLDPFPPFMLPLTAKFTQSPAFIYFVAGLSVAGLYTIISTLASFYNLLIKPGFCPALVSHFIILDVVMLGIVGTATGAAGGVAYIGLKGNSHVGWTKVCNKYGKLCTHLGASLAV 170          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497_PANGI (UPF0497 membrane protein OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.371e-28
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  132 MATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            M T KQTEL+  P  P ++   +KFTDSPAFIYFVAA SVA LYSIIT L S   + KP  AK+L+ +F   DV++L              YIGL+GN HSRWTKICN+YD +C+H+  +
Sbjct:    1 MVTGKQTELIPIPFPPYQIPYSSKFTDSPAFIYFVAAFSVAGLYSIITSLLSGLALLKPGYAKQLVSHFVVVDVLLLGIVAAAIGAAGGVGYIGLRGNSHSRWTKICNIYDTFCQHLAGS 120          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4972_SORBI (UPF0497 membrane protein Sb02g009660 OS=Sorghum bicolor GN=Sb02g009660 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.371e-28
Identity = 67/146 (45.89%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   57 RENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIP-IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            R ++ G D+ LR LLFA TL  +IV+ATAKQT  +  P IP + VS  AKF  SPA IY + A  V C YS++T L SL ++S  +  K L L     DV+                +IGLKGN H+ WTKICN+Y  +CRHIGS+
Sbjct:   30 RSSFSGADLALRALLFAVTLAGLIVLATAKQTVSIPVPEIPGLLVSRPAKFNHSPALIYLLVAQCVTCFYSLLTALTSLKLISGSSPTKTLFL-LVLLDVLYAAIMASATGSAGGVAWIGLKGNTHTNWTKICNIYGNFCRHIGSS 174          
The following BLAST results are available for this feature:
BLAST of CX292135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
U4974_RICCO2.246e-4861.33UPF0497 membrane protein 4 OS=Ricinus communis GN=... [more]
U497F_VITVI1.784e-3751.03UPF0497 membrane protein 15 OS=Vitis vinifera GN=G... [more]
U4972_MUSAC4.857e-3546.98UPF0497 membrane protein 2 OS=Musa acuminata GN=MA... [more]
U497C_SOYBN9.160e-3453.06UPF0497 membrane protein 12 OS=Glycine max PE=2 SV... [more]
U497D_SOYBN5.026e-3250.34UPF0497 membrane protein 13 OS=Glycine max PE=2 SV... [more]
U497P_ARATH2.495e-3149.29UPF0497 membrane protein At4g15610 OS=Arabidopsis ... [more]
U497F_ARATH8.025e-3047.48UPF0497 membrane protein At3g06390 OS=Arabidopsis ... [more]
U497_IPONI2.581e-2846.05UPF0497 membrane protein In26 (Fragment) OS=Ipomoe... [more]
U497_PANGI3.371e-2851.67UPF0497 membrane protein OS=Panax ginseng PE=2 SV=... [more]
U4972_SORBI3.371e-2845.89UPF0497 membrane protein Sb02g009660 OS=Sorghum bi... [more]

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Properties
Property NameValue
Genbank descriptionC04010H11SK FlavFr1 Citrus clementina cDNA clone C04010H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292135 ID=CX292135; Name=CX292135; organism=Citrus clementina; type=EST; length=605bp
AAACACATACTATGGCGTCTGAAGCTCCAGCGAAATATGAAGATCAAAGG
GCGGTGCGCGAAAACTATTTTGGCATCGATGTGGGTCTTAGAGTATTGCT
GTTTGCAGCAACGCTCGTTTCCGTAATCGTCATGGCTACCGCCAAGCAAA
CTGAGCTCGTAACCCCACCTGGGATTCCTATTAGAGTCAGCGTTAAAGCC
AAGTTTACCGATTCCCCGGCTTTCATATATTTTGTCGCGGCACTATCGGT
TGCTTGCCTATACAGTATCATCACAATGCTTGCATCACTTTCGGTGGTCT
CCAAGCCAGCTTCCGCAAAACGGCTGCTGCTCTATTTCGCATTCTGGGAC
GTGGTGATGTTGGGGATCGTAGCATCGGCAACTGGGGCATCGGGAGGGGT
GGCGTATATCGGATTAAAGGGCAACGACCACTCGAGATGGACAAAGATAT
GCAACGTTTACGACAAGTACTGCAGACATATAGGCAGCGCCACCGGGGTC
TCACTCCTCGCCGCTGTTCTTCTCGTGCTACTCTCCATGCTCTCCTCTTA
CTCCCTTTACTTGCGCATTCGTGATTGATCAGATCATTATTTAGATTATG
TATCT
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