CX292140

Overview
NameCX292140
Unique NameCX292140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292140_ssr110 microsatellite CX292140_ssr110:110..121. BLAST: Citrus ESTs to Prunus persica proteins V1
CX292140_ssr373 microsatellite CX292140_ssr373:373..384. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig402 contig Ccv1_Contig402:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX292140 vs. ExPASy Swiss-Prot
Match: AB7I_ARATH (Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 82/163 (50.31%), Postives = 105/163 (64.42%), Query Frame = 1 
Query:  226 NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDXXXXXXXXXXXXXXXXKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFI 705
            N++  PKL   RR     + V  Q     A+FSDPFV+QLAESLED                ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S+FI
Sbjct:   15 NLSSKPKLKSNRRTTSTSVSVRAQ-----ASFSDPFVLQLAESLEDSLSASPSSSLPLQ---RIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFTNAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFI 169
The following BLAST results are available for this feature:
BLAST of CX292140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AB7I_ARATH1.326e-3550.31Protein ABCI7, chloroplastic OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC04011A05SK FlavFr1 Citrus clementina cDNA clone C04011A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292140 ID=CX292140; Name=CX292140; organism=Citrus clementina; type=EST; length=710bp
GGGCGAGCGTAGGAAATAGCAAACCTCTGTGATGTCAAAGCACGACTCCT
TTTAACCAGAACGAGAACTGTAGACACAAACTCGAAACCGAGTCTCAAAC
TGTCTGGTCACAACAACAACACACTTCATCCAGATCCCAATCTATGTATA
ATCTAATCTATTAACAGCAAACACCATCATCATTCATCAATGTCTGCACT
TTCATTCTCACCACATCTTCACATAAACATAAACAGAAACCCCAAACTCA
CTCCAAAACGAAGAGCTAAACCCAACAAGATCAGAGTTTCACTGCAAACA
ACTTTTCCACAAGCCACCTTTTCAGACCCTTTTGTGATCCAGTTAGCAGA
GTCCCTTGAAGACTCTCTCCCCTCATCATCATCATCTTTACCGCAGCCTT
TGCCTCTCCAGAAACTTCGAGACTCTTCCTCACAAACCCTCCTGTCAACC
CCTTGGCCTTCTCGCAAAGATGAACCTTTTCGCTTCACTGACACTTCAAT
GATCAAAAGCTCCCAAATTCAACCCATTACTCGTCCTTCTTCTTCATTGG
ATGTTTCAACCGATGCCCAGTTCCCTAGTCTTGTTCTTATTGATGGGTTT
ATCCAAAATTCCGCTTTGAATTTGTCAAATTTACCTGACGGGGTCTATGT
TGGCAGCTTATTAGGTGTATCTGATGGGATTATGAAGAGGGTTAGTGATT
TTATAAGTGA
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