CX292145

Overview
NameCX292145
Unique NameCX292145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8343 contig Ccv1_Contig8343:891..1619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 358.992 bits (920), Expect = 1.503e-98
Identity = 183/236 (77.54%), Postives = 200/236 (84.75%), Query Frame = 1
Query:   25 YLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMKQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTGXXXXXXXXXXWPFYAYT-GAYVF 729
            YL K++L+RELD+LGPM FAEKMVLAVFG L+ LWMTR+ITDDIPGWG +F  RAGDGT SV+MATLLFIIPS  +KGEKLMDWNKCKKLPWNI+LLLGAGFAIADGVRTSGLA+ LSK L FLE APY AIAP VCLI+A ITEFTSNNATTTL+VPLLI+IAK M +HPLLLMVPGAIGAQFAFLLPTGTPSN+VGFTTGHIEI+DMIKTG                T GAYVF
Sbjct:  299 YLHKSHLRRELDLLGPMNFAEKMVLAVFGGLVVLWMTRNITDDIPGWGRIFAGRAGDGTVSVMMATLLFIIPSNIKKGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVRTSGLAEVLSKGLVFLETAPYWAIAPTVCLIAATITEFTSNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAIGAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTGLPLKIAGTIFLSILMPTLGAYVF 534          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.098e-40
Identity = 89/225 (39.56%), Postives = 127/225 (56.44%), Query Frame = 1
Query:   34 KANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR-AGDGTASVVMATLLFIIPSMK-------------QKGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            KA ++ E   LGP+ FAE+ V  +F     L  +R     IPGW +LF      D    V + T+LF  PS K              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + +P+L ++A  +HVHPL LM+PG +G  +AF+LP  TP N + F+TGH+ ++DM++TG
Sbjct:  323 KAVIQEEFQNLGPIKFAEQAVFILFCTFAILLFSRD-PKFIPGWASLFAPGFVSDAVTGVAIVTILFFFPSQKPSLKWWFDFKAPNSETEPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTG 546          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.211e-39
Identity = 82/208 (39.42%), Postives = 127/208 (61.06%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSM-KQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            ++++L  LG M + EK+VL VF +   LW+TR     +  W   F     DGT ++ ++ LLF+IP+  K+K ++++DW   K LPW +++L G G A+A G+  SGLA+ L + L  +E    L I  ++ +    +TE TSN AT T+++P+L  ++  ++VHPLLLMVP A+ A  A++LP GTP N + F TG I I+ M   G
Sbjct:  282 IRKKLSELGKMKYEEKVVLIVFLLASFLWITREFL--LKHW--TFTSEVADGTIAMFISVLLFLIPAKNKEKHKRIIDWEVAKDLPWGVLILFGGGLALAKGISESGLANWLGEQLKLIEGVSPLVIVLVITIFVLFLTEITSNTATATMILPILATLSVAVNVHPLLLMVPAAMAANCAYMLPVGTPPNAIVFGTGKISIKKMASVG 485          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.581e-39
Identity = 88/225 (39.11%), Postives = 127/225 (56.44%), Query Frame = 1
Query:   34 KANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR-AGDGTASVVMATLLFIIPSMK-------------QKGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            KA ++ E   LGP+ FAE+ V  +F +   L  +R     IPGW +LF      D    V + T+LF  PS K              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + +P+L ++A  +HVHPL LM+PG +   +AF+LP  TP N + F+TGH+ ++DM++TG
Sbjct:  323 KAVIQEEFQNLGPIKFAEQAVFILFCLFAILLFSRD-PKFIPGWASLFAPGFVSDAVTGVAIVTILFFFPSQKPSLKWWFDFKAPNSETEPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVSCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTG 546          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.523e-39
Identity = 91/229 (39.74%), Postives = 133/229 (58.08%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALF-----NDRAGDGTASVVMATLLFIIPSMKQKGE----------------KLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            L+ E   LGP++FAE  VL  F +L+ LW +R     +PGW  +           D T ++ +ATLLFI+PS K K                   L+DW   + K+PW I+LLLG GFA+A G   SGL+  + K ++ L A P  AI  I+ L+ A+ TE TSN ATTTL +P+   +++++ ++PL +M+P  + A FAF+LP  TP N + FT GH+++ DM+KTG
Sbjct:  302 LQEEYRKLGPLSFAEINVLICFFLLVILWFSRD-PGFMPGWLTVAWVEGETKYVSDATVAIFVATLLFIVPSQKPKFNFRSQTEEERKTPFYPPPLLDWKVTQEKVPWGIVLLLGGGFALAKGSEASGLSVWMGKQMEPLHAVPPAAITLILSLLVAVFTECTSNVATTTLFLPIFASMSRSIGLNPLYIMLPCTLSASFAFMLPVATPPNAIVFTYGHLKVADMVKTG 529          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.601e-39
Identity = 88/225 (39.11%), Postives = 126/225 (56.00%), Query Frame = 1
Query:   34 KANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR-AGDGTASVVMATLLFIIPSMKQ-------------KGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +A ++ E   LGP+ FAE+ V  +F M   L  TR     IPGW +LFN     D    V + T+LF  PS +              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P      ++ ++ A  TEF SN AT  + +P+L ++A  + VHPL LM+PG +G  FAF+LP  TP N + F +GH+ ++DM++TG
Sbjct:  325 RAVIREEYQNLGPIKFAEQAVFILFCMFAILLFTRD-PKFIPGWASLFNPGFLSDAVTGVAIVTILFFFPSQRPSLKWWFDFKAPNTETEPLLTWKKAQETVPWNIILLLGGGFAMAKGCEESGLSVWIGGQLHPLENVPPALAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLLVKDMVRTG 548          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.297e-37
Identity = 89/227 (39.21%), Postives = 134/227 (59.03%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGAL-FNDRAG-----DGTASVVMATLLFIIPS----MKQKGEK---------LMDWNKC-KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            ++ +  +LGPM+FAEK V  +F +L+ LW TR       GWG L F+D +G     DG+AS+++   LF++PS    + Q  +          L++W    KK+PWNI+LLLG G+A+A G   SGL+  L   L  L+  P  A   I+CL+ A  TE TSN ATTTL++P+L  +A+ + +HPL +M+P  + +  AF+LP  TP N + F+ G + + DM + G
Sbjct:  318 IQTQYRLLGPMSFAEKAVFILFVILVLLWFTRE-PGFFHGWGNLVFSDASGRVMVSDGSASILIGVFLFMVPSKIPGLTQDPDNPGRLKAPPALLNWKLVNKKMPWNIVLLLGGGYALAKGSEESGLSQWLGNKLMPLQHVPPPATVFIICLLVATFTECTSNAATTTLLLPILASMAQAICLHPLYVMLPCTLASSLAFMLPVATPPNAIVFSFGGLRVSDMARAG 543          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: S13A2_RAT (Solute carrier family 13 member 2 OS=Rattus norvegicus GN=Slc13a2 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.306e-37
Identity = 91/228 (39.91%), Postives = 134/228 (58.77%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAV-FGMLIALWMTRSITDDIPGWG-ALFNDRAG-----DGTASVVMATLLFIIPSM--------KQKGE-----KLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K +  +LGPM+FAEK    V F +L+ LW TR      PGWG  +F +  G     DGT ++ ++ ++FIIPS         K+ G+      ++ W     K+PWNI++LLG GFA+A G   SGL++ L   L  L+  P  A A I+CL+ AI TE TSN ATTTL +P+L  +A+ + +HPL +M+P  + A  AF+LP  TP N + F+ G +++ DM + G
Sbjct:  309 IKTQYRLLGPMSFAEKTCSTVLFVLLVVLWFTRE-PGFFPGWGDTVFANEKGQSMPSDGTVAIFISLVMFIIPSKIPGLMEDPKKPGKLKAPPAILTWKTVNDKMPWNIVILLGGGFALAKGSEQSGLSEWLGDKLTPLQHIPPSATAVILCLLIAIFTECTSNVATTTLFLPILASMAQAICLHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAG 535          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.593e-37
Identity = 87/229 (37.99%), Postives = 131/229 (57.21%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALF-----NDRAGDGTASVVMATLLFIIPSMKQKGE----------------KLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            L  E   LGP+++AE  VL  FG+LI LW +R     +PGW ++           D T ++ +A LLFI+PS K K                   L++W   + K+PW I+LLLG GFA+A G  TSGL++ +++ ++ L +     I  I+  I A+ TE TSN ATTTL +P+   +A+++ +HPL +M+P  + A  AF+LP  TP N + F  GH+++ DM+KTG
Sbjct:  306 LYEEYRKLGPLSYAECNVLFCFGLLIILWFSRD-PGFMPGWLSIAWIEGNTKHVTDATVAIFVAILLFIVPSQKPKFNFSRQTEEERKTPFYPPPLLNWKVTQEKVPWGIVLLLGGGFAMAKGCETSGLSEWMARQMEPLSSVRPAIITLILSCIVAMTTECTSNVATTTLFLPIFASMARSIGIHPLYVMIPCTLSASLAFMLPVATPPNAIVFAYGHLKVIDMVKTG 533          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 78/208 (37.50%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T+++P+L  ++  + VHPLLLM P A+ A  A++LP GTP N + F +G I I+ M   G
Sbjct:  283 IKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
The following BLAST results are available for this feature:
BLAST of CX292145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
TDT_ARATH1.503e-9877.54Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A3_MOUSE7.098e-4039.56Solute carrier family 13 member 3 OS=Mus musculus ... [more]
SDCS_STAS11.211e-3939.42Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A3_RAT1.581e-3939.11Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A5_HUMAN3.523e-3939.74Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A3_HUMAN4.601e-3939.11Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
S13A2_RABIT3.297e-3739.21Solute carrier family 13 member 2 OS=Oryctolagus c... [more]
S13A2_RAT4.306e-3739.91Solute carrier family 13 member 2 OS=Rattus norveg... [more]
S13A5_RAT9.593e-3737.99Solute carrier family 13 member 5 OS=Rattus norveg... [more]
SDCS_STAAR1.636e-3637.50Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionC04011A10SK FlavFr1 Citrus clementina cDNA clone C04011A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292145 ID=CX292145; Name=CX292145; organism=Citrus clementina; type=EST; length=729bp
CTCGTGCGATTCGGCACGAGGGAGTATTTGGACAAAGCAAATCTCAAGAG
AGAGCTTGACATGTTAGGTCCAATGGCTTTTGCTGAAAAGATGGTACTAG
CTGTATTTGGGATGCTAATAGCATTGTGGATGACAAGATCAATAACAGAT
GACATTCCAGGTTGGGGAGCACTCTTCAATGACCGTGCTGGTGATGGAAC
TGCTAGTGTTGTGATGGCAACATTGTTGTTCATAATTCCGAGCATGAAGC
AAAAGGGAGAAAAATTGATGGATTGGAACAAATGCAAGAAGCTACCTTGG
AACATTATATTGCTTTTAGGGGCTGGCTTTGCTATAGCTGATGGAGTCAG
GACTAGTGGTCTTGCTGATGATCTATCAAAAGCATTGGATTTCCTGGAGG
CAGCGCCCTATTTAGCCATTGCACCCATCGTATGTCTGATTAGCGCGATT
ATTACTGAATTCACATCAAATAATGCCACAACAACCCTCGTTGTTCCACT
TCTGATCCAAATAGCAAAAACTATGCATGTTCATCCATTGCTTCTTATGG
TTCCTGGAGCAATTGGAGCACAATTTGCTTTCTTGTTGCCGACTGGAACC
CCTTCAAATATTGTTGGATTCACAACCGGGCACATCGAAATTCAAGATAT
GATCAAGACAGGGCTGCCCCTTAGATTGCTGGCATTGCTGCTCTGGCCTT
TCTATGCCTACACTGGTGCTTATGTTTTT
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