CX292149

Overview
NameCX292149
Unique NameCX292149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292149_ssr388 microsatellite CX292149_ssr388:388..399. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig404 contig Ccv1_Contig404:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX292149 vs. ExPASy Swiss-Prot
Match: AB7I_ARATH (Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.014e-27
Identity = 69/133 (51.88%), Postives = 88/133 (66.17%), Query Frame = 1 
Query:  322 ARAPFSPFWGGQLAESLEDXXXXXXXXXXXXXXXXKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVS 711
            A+A FS  +  QLAESLED                ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S
Sbjct:   37 AQASFSDPFVLQLAESLEDSLSASPSSSLPLQ---RIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFTNAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRIS 166
The following BLAST results are available for this feature:
BLAST of CX292149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AB7I_ARATH1.014e-2751.88Protein ABCI7, chloroplastic OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC04011B03SK FlavFr1 Citrus clementina cDNA clone C04011B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292149 ID=CX292149; Name=CX292149; organism=Citrus clementina; type=EST; length=713bp
GGAATTCGGCACGAGGCGCCGGCAAGCAGCTCGAGGATGGCCGAACTCTC
GCCGATTACAACATTCAAAAGGAGTCCACTCTCCACCTTGTCCTCCGTCT
CCGTGGTGGTGACTTCTAAAAAAATAAATGTGGATGTGTCCGCGTTTGAT
TGGATGGCGCTAATAATAATTAATTAGGTTGGATTGGGCGCTTTGCTTTA
ATTATTTTGTAATTACAATTGTGTAATGGCCAGCCGCTTGGGCCTAATTT
CCTCTTTCTATTGGTAATAATAATATAAGCACTAGTTTTTAAAAAAAAAA
AAAAAAAAACCTTCGGGGGGGGCCCGGGCCCCCTTTTCCCCTTTTTGGGG
GGGCCAGTTAGCAGAGTCCCTTGAAGACTCTCTCCCCTCATCATCATCAT
CTTTACCGCAGCCTTTGCCTCTCCAGAAACTTCGAGACTCTTCCTCACAA
ACCCTCCTGTCAACCCCTTGGCCTTCTCGCAAAGATGAACCTTTTCGCTT
CACTGACACTTCAATGATCAAAAGCTCCCAAATTCAACCCATTACTCGTC
CTTCTTCTTCATTGGATGTTTCAACCGATGCCCAGTTCCCTAGTCTTGTT
CTTATTGATGGGTTTATCCAAAATTCCGCTTTGAATTTGTCAAATTTACC
TGACGGGGTCTATGTTGGCAGCTTATTAGGTGTATCTGATGGGATTATGA
AGAGGGTTAGTGA
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