CX292158

Overview
NameCX292158
Unique NameCX292158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15504 contig Ccv1_Contig15504:60..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.078e-79
Identity = 143/244 (58.61%), Postives = 185/244 (75.82%), Query Frame = 2
Query:    8 EQKMAQIARSLLVPCVQELVKNPALV-VPDRYIRPDQDSPLISDDTLIS-QIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVHLRKPHLFPELPSSLRETLEVYSMELKTLSENLISKMGEVLNIKDEEMREFFE--NGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAILRQL 727
            E K A    S+LVP VQE+VK   +  VP RY+R DQD   + DD  +  +IP+IDM+ L S  +MDSE+ KLDFACKEWGFFQLVNHG+ ++FL+K+K E++ FFNL MEEKKK+WQ P +IEGFGQAFVVSE+QKLDWADLF     PV LRKPHLFP+LP   R+TLE+YS E++++++ LI+KM   L IK EE+ + F+  + VQ MRMNYYPPCPQP++V+GL+PHSD+  L +L Q+
Sbjct:    2 EAKGAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQV 245          
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.013e-41
Identity = 98/241 (40.66%), Postives = 139/241 (57.68%), Query Frame = 2
Query:   11 QKMAQIARSLLVPCVQELVKNPALVVPDRYIRPD--QDSPLISDDTLISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVHLRKPHLFPELPSSLRETLEVYSMELKTLSENLISKMGEVLNIKDEEMREFFENGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAILRQL 727
            + +  +  SL V  VQ L       +P+RY+RP+   D  +  D++L  +IPVID+  LL ++    ELAK   AC +WGFFQL+NHG+    +EK+K + E FF L  +EK  Y Q P  +EG+GQAFV SEEQKLDWAD+  ++T PV  R    +P  P+S RET+E YSMEL+ ++  L   M + L ++ E + +     V        P      + +GLSPHSDA  L +L Q+
Sbjct:    3 KNLTGVGGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSL--EIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRT-VFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQV 240          
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.417e-29
Identity = 73/235 (31.06%), Postives = 124/235 (52.77%), Query Frame = 2
Query:   53 VQELVKNPALVVPDRYIRPDQDSPLISDDTLIS------QIPVIDMQSLLSKESMDSE--LAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVHLRKPHLFPELPSSLRETLEVYSMELKTLSENLISKMGEVLNIKDEEMRE---FFENGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAIL 718
            V+ L K+  + +P  YIRP ++   I+D  L        Q+P ID++++ S +    E  + +L  A  +WG   L+NHG+    +E++KK  E FF+LS+EEK+KY   Q  G I+G+G     +   +L+W D F  +  P   R   ++P+ PS   E    Y+  L+ L+  +   +   L ++ + + +     E  +  M++NYYP CPQPE  +G+  H+D +AL  +
Sbjct:    7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241          
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.571e-26
Identity = 71/220 (32.27%), Postives = 114/220 (51.82%), Query Frame = 2
Query:   86 VPDRYIRPDQDSPLISDDTLISQIPVIDMQSLLSKE-SMDSELAKL-DFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVH--LRKPHLFPELPSSLRETLEVYSM---ELKTLSENLISKMGEVLNIKDEEMREFFENGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAILRQ 724
            +P ++I P+ +SP   D      +P+ID+  +LS + +  +E+ +L   AC+  GFFQ+VNHG+    L    + V+ FF + + EK++  +HPG+  G+  +F      KL W +  +  + P    L   ++   L    R   EVY+    E+  LS  ++  +GE L +     R FFE     MR+NYYPPC +P + +G  PH D  +L IL Q
Sbjct:   17 IPSQFIWPEGESPT-PDAAEELHVPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQ 235          
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.052e-26
Identity = 70/234 (29.91%), Postives = 119/234 (50.85%), Query Frame = 2
Query:   62 LVKNPALV-----VPDRYIRPDQDSPLISDDTLISQIPVIDMQSLLSKESMDSELAKL-DFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVHLRKPHLFPELPSSLR-------ETLEVYSMELKTLSENLISKMGEVLNIKDEEMREFFENGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAILRQ 724
            L+ NP+++     +P+++I PD + P I+   L   +P+ID+Q+LLS  S   + ++L   ACK+ GFF +VNHG+S   +    +    FF++ + EK++  +  G+  G+  +F      KL W +  +        R   +      +L        +  + Y   + +LS  ++  +G  L +K +  REFFE     MR+NYYPPC +P+  +G  PH D  +L IL Q
Sbjct:   27 LIFNPSMLNLQANIPNQFIWPDDEKPSIN--VLELDVPLIDLQNLLSDPSSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMPLSEKQRVLRKSGESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKSVQDYFCDALGHGFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQ 258          
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 72/243 (29.63%), Postives = 122/243 (50.21%), Query Frame = 2
Query:   41 LVPCVQELVKNPALVVPDRYIRPDQDSPLISD------DTLISQIPVIDMQSLLSKESM------DSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVHLRKPHLFPELPSSLRETLEVYSMELKTLSENLISKMGEVLNIKDEEMRE---FFENGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAIL 718
            + P V+ L  +    +P  YIRP ++   I +           Q+P ID++ + S++ +      +    +L  A  EWG   LVNHG+S   + ++K   E FFNL MEEK+KY   Q  G I G+G     +   +L+W D F  +  P   R   ++P+ PS        YS++L++L+  ++S +   L +++  + +     E  +   ++NYYP CPQPE  +G+  H+D +AL  +
Sbjct:    5 VAPRVESLSSSGIQSIPKEYIRPQEELTSIGNVFEEEKKDEGPQVPTIDLKDIESEDEVVRREIRERCREELKKAAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFI 247          
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.330e-25
Identity = 70/220 (31.82%), Postives = 112/220 (50.91%), Query Frame = 2
Query:   86 VPDRYIRPDQDSPLISDDTLISQIPVIDMQSLLSKESM-DSELAKL-DFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVH--LRKPHLFPELPSSLRETLEVYSM---ELKTLSENLISKMGEVLNIKDEEMREFFENGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAILRQ 724
            +P ++I P+ +SP   D      +P+ID+  +LS +    +E+ +L   AC+  GFFQ+VNHG+    L    + V+ FF + + EK++  + PG+  G+  +F      KL W +  +  + P    L   ++   L    R   EVY+    E+  LS  ++  +GE L +     R FFE     MR+NYYPPC +P + +G  PH D  +L IL Q
Sbjct:   17 IPSQFIWPEGESPT-PDAAEELHVPLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQ 235          
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.330e-25
Identity = 60/213 (28.17%), Postives = 112/213 (52.58%), Query Frame = 2
Query:   98 YIRPDQDSPLISDDTLISQIPVIDMQSLLS-KESMDSELA-KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVHLRKPHLFPELPSSLRETLEVYSMELKTLSENLISKMGEVLNIKDEEMREFFENGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAILRQLM 730
            ++R + + P ++ +   ++IP+I +  L    +    E+  K+  AC++WG FQ+V+HG+ +  + ++ +    FF L  EEK +Y    G   GF  + V+  +  +DW +     + P++ R    +P+ P   R T EVYS +L  L   L+  + E + ++  ++ +   +  Q + +NYYP CPQP+  +G+  H+D   + IL Q M
Sbjct:   19 FVRDEDERPKVAYNQFSNEIPIISLAGLDDDSDGRRPEICRKIVKACEDWGIFQVVDHGIDSGLISEMTRLSREFFALPAEEKLEYDTTGGKRGGFTISTVLQGDDAMDWREFVTYFSYPINARDYSRWPKKPEGWRSTTEVYSEKLMVLGAKLLEVLSEAMGLEKGDLTKACVDMEQKVLINYYPTCPQPDLTLGVRRHTDPGTITILLQDM 231          
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.869e-25
Identity = 69/235 (29.36%), Postives = 120/235 (51.06%), Query Frame = 2
Query:   53 VQELVKNPALVVPDRYIRPDQDSPLISD------DTLISQIPVIDMQSLLS-KESMDSELA-KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVHLRKPHLFPELPSSLRETLEVYSMELKTLSENLISKMGEVLNIKDEEMRE---FFENGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAIL 718
            V+ L  +    +P  YIRP  +   I D      +    Q+P ID++ + S  E + ++   KL  A  +WG   LVNHG+S   ++K++K  + FF+L +E+K+KY   Q  G I+G+G     +   +L+W D F     P   R   ++P+ P+   E    Y+ +L+ L+  ++  +   L + +  + +     E  +  M++NYYP CPQPE  +G+  H+D +AL  +
Sbjct:   11 VETLAGSGISTIPKEYIRPKDELVNIGDIFEQEKNNEGPQVPTIDLKEIESDNEKVRAKCREKLKKAAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 245          
BLAST of CX292158 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.053e-25
Identity = 69/220 (31.36%), Postives = 113/220 (51.36%), Query Frame = 2
Query:   86 VPDRYIRPDQDSPLISDDTLISQIPVIDMQSLLSKESMDS-ELAKL-DFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDWADLFNMMTLPVH--LRKPHLFPELPSSLRETLEVYSM---ELKTLSENLISKMGEVLNIKDEEMREFFENGVQXMRMNYYPPCPQPEKVMGLSPHSDAAALAILRQ 724
            +P ++I P+ +SP   D      +P+I++  +LS ++  + E+ +L   AC+  GFFQ+VNHG+    L    + V+ FF + + EK++  + PG+  G+  +F      KL W +  +  + P    L   ++   L    R   EVY+    E+  LS  ++  +GE L +     R FFE     MR+NYYPPC +P + +G  PH D  +L IL Q
Sbjct:   17 IPSQFIWPEGESPT-PDAAEELHVPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQ 235          
The following BLAST results are available for this feature:
BLAST of CX292158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
SRG1_ARATH6.078e-7958.61Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA1.013e-4140.66S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
LDOX_ARATH4.417e-2931.06Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
GAO1D_WHEAT1.571e-2632.27Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAOX1_ARATH2.052e-2629.91Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
LDOX_VITVI7.796e-2629.63Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
GAO1B_WHEAT1.330e-2531.82Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
FNSI_PETCR1.330e-2528.17Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
LDOX_MALDO3.869e-2529.36Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
GAO1A_WHEAT5.053e-2531.36Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionC04011B12SK FlavFr1 Citrus clementina cDNA clone C04011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292158 ID=CX292158; Name=CX292158; organism=Citrus clementina; type=EST; length=740bp
ATTTGAGGAACAAAAGATGGCCCAGATTGCAAGATCTCTCCTTGTGCCTT
GTGTTCAAGAGTTGGTCAAGAATCCTGCGTTAGTTGTCCCCGACAGATAC
ATACGTCCAGATCAAGATTCACCCCTCATTTCTGATGATACTTTGATTTC
ACAGATACCAGTTATTGACATGCAAAGCTTACTTTCTAAAGAATCAATGG
ATTCTGAGCTAGCCAAGCTCGACTTCGCATGCAAAGAATGGGGTTTTTTC
CAGCTGGTAAATCATGGAATGAGCACAGCATTTCTAGAGAAATTAAAGAA
AGAGGTTGAGGGATTCTTCAATCTCAGCATGGAAGAAAAGAAAAAATATT
GGCAGCATCCAGGAGATATAGAAGGATTTGGACAAGCCTTTGTTGTATCC
GAGGAACAAAAGCTTGATTGGGCTGACCTTTTCAACATGATGACTCTTCC
AGTTCATCTGAGGAAGCCACACTTATTTCCTGAGCTCCCTTCTTCCCTCA
GAGAGACCTTGGAAGTTTACTCAATGGAATTAAAAACCCTTTCCGAGAAC
CTAATATCGAAAATGGGAGAAGTGTTAAATATCAAAGATGAAGAAATGAG
AGAATTCTTTGAAAATGGAGTGCAAGNCATGAGGATGAATTATTACCCTC
CATGTCCTCAGCCCGAGAAGGTTATGGGCCTGTCGCCTCATTCTGATGCA
GCTGCACTTGCCATTCTGCGACAACTAATGAAGTGGAGGG
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