CX292166

Overview
NameCX292166
Unique NameCX292166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14313 contig Ccv1_Contig14313:278..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 400.979 bits (1029), Expect = 3.142e-111
Identity = 199/230 (86.52%), Postives = 207/230 (90.00%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIHVPAGLIYSFPVT 690
            AFPL+KGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE HAAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRALGQISE+LNVQVSDVKNVIIWGNHSSSQYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYS     VP+GLIYSFPVT
Sbjct:   62 AFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVT 291          
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 9.142e-111
Identity = 198/230 (86.09%), Postives = 206/230 (89.57%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIHVPAGLIYSFPVT 690
            AFPL+KGVVATTDA EAC GVN+AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+LNVQVSDVKNVIIWGNHSS+QYPDVNHATV T   +KPVRELV DDAWLNGEFITTVQQRGAAIIKARK           CDHI DWVLGTPEGTWVSMGVYS    +VPAG+IYSFPVT
Sbjct:   62 AFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSTQYPDVNHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVT 291          
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.660e-110
Identity = 197/230 (85.65%), Postives = 210/230 (91.30%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIHVPAGLIYSFPVT 690
            AFPL+KGVVATTD VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+HAA NCKVLVVANPANTNALILKEFAPSIP +NI+CLTRLDHNRALGQISE+LNVQVSDVKNVIIWGNHSS+QYPDVNHATVNT AGEKPVR+LV DDAWLNGEFI+TVQQRGAAIIKARK           CDHIRDWVLGTP+GT+VSMGVYS    +VP+GLIYSFPVT
Sbjct:   62 AFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVT 291          
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 3.474e-110
Identity = 196/230 (85.22%), Postives = 210/230 (91.30%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIHVPAGLIYSFPVT 690
            AFPL+KGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+HAAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQ+SE+L+V VSDVKNVIIWGNHSS+QYPDVNHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK           CDHIRDWV+GTPEGT+VSMGVYS    +VPAGLIYSFPVT
Sbjct:   62 AFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVKNVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVT 291          
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 394.045 bits (1011), Expect = 3.841e-109
Identity = 196/230 (85.22%), Postives = 205/230 (89.13%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIHVPAGLIYSFPVT 690
            AFPL+KG+VATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE HAAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISEKLNVQV+DVKN IIWGNHSS+QYPDVNHATV T +GEKPVRELV DD WLN EFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYS     VPAGLIYSFPVT
Sbjct:   62 AFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVT 291          
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 394.045 bits (1011), Expect = 3.841e-109
Identity = 195/230 (84.78%), Postives = 209/230 (90.87%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIHVPAGLIYSFPVT 690
            AFPL+KGVVATTDAVE CTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALE+HAAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+L+V VSDVKNVIIWGNHSSSQYPDVNHA V T++GEKPVRELVKDDAWL+GEFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYS     VP+GLIYSFPVT
Sbjct:   62 AFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKHAAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKNVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVT 291          
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.118e-108
Identity = 195/230 (84.78%), Postives = 203/230 (88.26%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIHVPAGLIYSFPVT 690
            AFPL+KGVVATTD  EAC GVN+AVMVGGFPRKEGMERKDVM KNVSIYK+QASALEQ+AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISE+LN QVSDVKNVIIWGNHSSSQYPDVN  TV T +GEK VRELV DDAWLNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGTWVSMGVYS    +VPAG+IYSFPVT
Sbjct:   62 AFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQYAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQVSDVKNVIIWGNHSSSQYPDVNPCTVKTGSGEKAVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVT 291          
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 260.381 bits (664), Expect = 6.628e-69
Identity = 133/231 (57.58%), Postives = 163/231 (70.56%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIH-VPAGLIYSFPVT 690
            A PL+K V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V   A E  V E VKDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ S    + VP  L+YSFPVT
Sbjct:   61 ALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVT 291          
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 258.455 bits (659), Expect = 2.519e-68
Identity = 131/230 (56.96%), Postives = 163/230 (70.87%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIH-VPAGLIYSFPV 687
            A PL+K V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V  +DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEF+TTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMGV S    + VP  L+YSFPV
Sbjct:   61 ALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPV 290          
BLAST of CX292166 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.296e-68
Identity = 129/229 (56.33%), Postives = 155/229 (67.69%), Query Frame = 1
Query:    1 AFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSXWFIHVPAGLIYSFPV 687
            A+PLI   V T D  EA TGV+ A++VG  PR+EGMER D++  N +I+K Q  AL +HA  N KVLVV NPANTNALI +  A  IP +N TCLTRLD NRA  QI+ K  V V DV NVIIWGNHSS+QYPD     +N + G+ P+   +KD+ WL GEFI+TVQ+RGAA+I ARK            DH+ DWVLGT EG +VSMGVYS     VP GLI+SFPV
Sbjct:   62 AYPLIADTVITADVKEAFTGVHYAILVGAMPRREGMERADLLKANAAIFKVQGKALAEHANKNVKVLVVGNPANTNALIAQVSANGIPKENFTCLTRLDQNRAKSQIALKAGVNVKDVHNVIIWGNHSSTQYPDYRCGYINLSTGKTPISTAIKDEKWLQGEFISTVQKRGAAVIAARKLSSAASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGSYGVPEGLIFSFPV 290          
The following BLAST results are available for this feature:
BLAST of CX292166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
MDHC_MAIZE3.142e-11186.52Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_MESCR9.142e-11186.09Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_MEDSA2.660e-11085.65Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC2_ARATH3.474e-11085.22Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC_ORYSJ3.841e-10985.22Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC1_ARATH3.841e-10984.78Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_BETVU1.118e-10884.78Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_PIG6.628e-6957.58Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_HUMAN2.519e-6856.96Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
MDHC_DICDI4.296e-6856.33Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC04011C10SK FlavFr1 Citrus clementina cDNA clone C04011C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292166 ID=CX292166; Name=CX292166; organism=Citrus clementina; type=EST; length=691bp
GCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATGCTGTTGAGGC
ATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAAG
AAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAG
GCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACTGCAAGGTTCT
AGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTGAAAGAATTTG
CGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAGATTGGATCAT
AACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGA
TGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCTCAGTACCCTG
ATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGT
GAGCTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGT
CCAACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTC
TGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGA
ACTCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGNATGGTTCAT
ACATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCT
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