CX292181

Overview
NameCX292181
Unique NameCX292181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292181 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.371e-46
Identity = 94/242 (38.84%), Postives = 143/242 (59.09%), Query Frame = 3
Query:    3 PVFITTPFHVSEIQAIVKCSKKYGLQIRVRSGGHDHDALSSVSYVPFIIVDLINFSEVSVDAEEKTAWVQSGATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXXXXRKYGTAADHVVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAIPRTLEXNATXLLNKWQYIADRVHEDLF----ISPILFRMKFTMVSIFTSLFSGGIDRLLSL 716
            P  I TP   S + A V CSK     +++RSGGHD+D LS +S  PF I+D+ N  +VSVD    +AW+ +GAT+G++ YRI EKS+ +  F                       RK+G + D+V DA ++DV GR L+R++MGEDLFWAI GGGG S+G+++ +K+ LV VPS VTVF + + ++  A  +++KWQ +  +   +LF    I P+  +   T+ +   +LF G  D +++L
Sbjct:   87 PTIIITPRSESHVSAAVTCSKTLNFLLKIRSGGHDYDGLSYISDKPFFILDMSNIRDVSVDIASNSAWISAGATLGEVYYRIWEKSR-VHGFPAGVCPTVGVGGHLSGGGYGNMVRKFGLSVDYVEDAKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPVPSVVTVFRVEQYMDSGAVDMVHKWQSVGPKTDPNLFMRMLIQPVTRKKVKTVRASVVALFLGRADEVVAL 327          
BLAST of CX292181 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.130e-45
Identity = 93/211 (44.08%), Postives = 129/211 (61.14%), Query Frame = 3
Query:    3 PVFITTPFHVSEIQAIVKCSKKYGLQIRVRSGGHDHDALSSVSYVPFIIVDLINFSEVSVDAEEKTAWVQSGATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXXXXRKYGTAADHVVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAIPRTLEXN-ATXLLNKWQYIADRVHEDLFIS 632
            P  I  P    E+   ++C +K    IR+RSGGH ++ LS  S  PFI++DL+N + VS+D E +TAWV+SG+T+G+L Y I E S  L  F                       RKYG AAD+VVDA +ID  G  L+R++MGED+FWAIRGGGG  +G I +WKI L+ VP  VTVF + + +  + AT LL+KWQ++A+ + ED  +S
Sbjct:   71 PSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKL-GFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 280          
BLAST of CX292181 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.569e-44
Identity = 92/211 (43.60%), Postives = 129/211 (61.14%), Query Frame = 3
Query:    3 PVFITTPFHVSEIQAIVKCSKKYGLQIRVRSGGHDHDALSSVSYVPFIIVDLINFSEVSVDAEEKTAWVQSGATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXXXXRKYGTAADHVVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAIPRTLE-XNATXLLNKWQYIADRVHEDLFIS 632
            P FI  P    E+ + V C  +    IR+RSGGH ++ LS  +  PF+IVD++N + +S+D   +TAWV+SGAT+G+L Y IA+ S + L F                       RKYG AAD+VVDA +ID  G  L+RE MG+D+FWAIRGGGG  +G I +WKI L+ VP  +TVF + + +   +A+ LL+KWQY+AD + ED  +S
Sbjct:   75 PSFIVMPGSKEELSSTVHCCTRESWTIRLRSGGHSYEGLSYTADTPFVIVDMMNLNRISIDVLSETAWVESGATLGELYYAIAQ-STDTLGFTAGWCPTVGSGGHISGGGFGMMSRKYGLAADNVVDAILIDSNGAILDREKMGDDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKLTVFRVTKNVGIEDASSLLHKWQYVADELDEDFTVS 284          
BLAST of CX292181 vs. ExPASy Swiss-Prot
Match: YVDP_BACSU (Uncharacterized FAD-linked oxidoreductase yvdP OS=Bacillus subtilis GN=yvdP PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 59/198 (29.80%), Postives = 88/198 (44.44%), Query Frame = 3
Query:   36 EIQAIVKCSKKYGLQIRVRSGGHDHDA-LSSVSYVPFIIVDLINFSEVSVDAEEKTAWVQSGATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXXXXRKYGTAADHVVDAHMIDVKGRFLNRE-SMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAIPRTLEXNATXLLNKWQYIADRVHEDL 623
            ++   +K +++  + +RVRSG H  D  LS VS    I++D+ + ++V +D E   A VQ+G  VG L   +A                                R  G  +D+++    +D KGR ++ + S  EDL WA RGGGG +FG    +   +   P T TVF I    E   T +   WQ  A  V E L
Sbjct:   44 DVSNAIKWARENKVPLRVRSGRHALDKNLSVVS--GGIVIDVSDMNKVFLDEENAIATVQTGIPVGPLVKGLARDG---FMAPFGDSPTVGIGGITMGGGFGVLSRSIGLISDNLLALKTVDAKGRIIHADQSHNEDLLWASRGGGGGNFGYNTQYTFKVHRAPKTATVFNIIWPWEQLET-VFKAWQKWAPFVDERL 235          
The following BLAST results are available for this feature:
BLAST of CX292181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RETOL_ARATH6.371e-4638.84Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_ESCCA4.130e-4544.08Reticuline oxidase OS=Eschscholzia californica GN=... [more]
RETO_PAPSO1.569e-4443.60Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
YVDP_BACSU1.341e-1129.80Uncharacterized FAD-linked oxidoreductase yvdP OS=... [more]
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Properties
Property NameValue
Genbank descriptionC04011E02SK FlavFr1 Citrus clementina cDNA clone C04011E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292181 ID=CX292181; Name=CX292181; organism=Citrus clementina; type=EST; length=717bp
AACCTGTATTCATCACCACTCCATTTCACGTATCCGAAATCCAAGCAATC
GTTAAATGCTCCAAAAAATATGGCCTACAAATTAGAGTTCGAAGTGGAGG
TCATGATCACGACGCTCTTTCTTCTGTTTCCTATGTTCCATTTATCATCG
TCGATTTGATAAATTTTAGCGAAGTCAGTGTCGATGCAGAAGAAAAGACG
GCATGGGTTCAATCTGGTGCTACCGTTGGCCAACTTAATTATAGAATTGC
TGAGAAGAGTCAAAATCTGTTGGCCTTTCCGGTCGGAACTTGCCCTACGG
TGGGCGTTGGTGGACACTTAAGTGGTGGTGGCTTTGGTCCTTTGTTGCGT
AAATACGGTACTGCTGCAGATCATGTAGTTGATGCTCACATGATTGATGT
CAAAGGTAGATTTCTGAATAGAGAATCAATGGGAGAAGATCTGTTTTGGG
CCATTCGCGGAGGCGGAGGAGCTAGCTTTGGAATCATTGTTTCATGGAAA
ATAAATCTAGTCGCTGTTCCATCAACTGTGACTGTATTTGCTATCCCAAG
AACCTTGGAACANAATGCAACANAGCTGCTTAACAAATGGCAGTACATTG
CAGATAGAGTCCATGAAGATTTATTCATCTCACCCATCTTATTCAGAATG
AAATTCACCATGGTCTCTATATTCACATCCTTATTTTCTGGTGGGATTGA
TAGGCTACTTTCATTGA
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