CX292205

Overview
NameCX292205
Unique NameCX292205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292205_ssr610 microsatellite CX292205_ssr610:610..619. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.380e-26
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   83 PAPFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            PAPFL KTY L+   DD     +VSWN +G  FVVW  AEF++ +LP+YFKHNNFSSFIRQLNTY
Sbjct:   12 PAPFLSKTYQLV---DDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTY 73          

HSP 2 Score: 49.2914 bits (116), Expect = 2.380e-26
Identity = 35/119 (29.41%), Postives = 50/119 (42.02%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKQHNNHLL------------------LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYM 695
            GF+KT P +WEF +D FRRG   LL +I R+KS  +          +     S  G  H +                     L  ENE LKRE   L  ++A  K    +L+  L+ ++
Sbjct:   74 GFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENMVADLSGENEKLKRENNNLSSELAAAKKQRDELVTFLTGHL 192          
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.991e-26
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   83 PAPFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            P PFL KTYD++++   D    IVSW+   + F+VW P EFS  +LPKYFKHNNFSSF+RQLNTY
Sbjct:   50 PPPFLSKTYDMVEDPATDA---IVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTY 111          

HSP 2 Score: 51.9878 bits (123), Expect = 3.991e-26
Identity = 30/92 (32.61%), Postives = 49/92 (53.26%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKS-----DPSVFPAYLKAASNEGSIASAAGKQHNNHLLLMEENESLKRERLQLQMQIAEFK 653
            GF+K  P +WEF ++ F RG +HLL +I R+KS       S  P   + +  +GS+A+ +         L EE E LKR++  L  ++ + +
Sbjct:  112 GFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLR 203          
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.242e-26
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   83 PAPFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            P PFL KT++L+++   D    ++SWN  G  F+VW+P +F++ +LPK+FKHNNFSSF+RQLNTY
Sbjct:   21 PTPFLTKTFNLVEDSSIDD---VISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTY 82          

HSP 2 Score: 53.5286 bits (127), Expect = 5.242e-26
Identity = 36/131 (27.48%), Postives = 62/131 (47.33%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPS----VFPAYLKAASNEGSIASAAGKQHNNHLL------------------------LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGN 701
            GFKK  P +WEF +D F+RG + LL EI R+K   +    V P+  +         S +G+ +NN+ +                        L+EENE L+ + +QL  ++ + K++   +   +S Y+G+
Sbjct:   83 GFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQTVVAPSSEQRNQTMVVSPSNSGEDNNNNQVMSSSPSSWYCHQTKTTGNGGLSVELLEENEKLRSQNIQLNRELTQMKSICDNIYSLMSNYVGS 213          
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.941e-25
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   83 PAPFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            P PFL KTYD++   DD     IVSW+A  + F+VW P EF+  +LPK FKHNNFSSF+RQLNTY
Sbjct:   35 PPPFLSKTYDMV---DDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTY 96          

HSP 2 Score: 50.0618 bits (118), Expect = 1.941e-25
Identity = 31/114 (27.19%), Postives = 54/114 (47.37%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKQHNNHLLLMEENESLKRERLQLQMQIAEFK----ALEIKLLDSLSQYMGNFNHQNKL 722
            GF+K  P +WEF ++ F RG +HLL  I R+K        + ++  + G  +S +         L EE E LKR++  L  ++   +    + + +L   + +  G  N Q +L
Sbjct:   97 GFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQL 210          
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.948e-25
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   83 PAPFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            P PFL KTY L+   DD     ++SWN  G  FVVW PAEF+  +LPKYFKHNNFSSF+RQLNTY
Sbjct:   46 PTPFLTKTYQLV---DDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTY 107          

HSP 2 Score: 47.3654 bits (111), Expect = 1.948e-25
Identity = 40/137 (29.20%), Postives = 59/137 (43.07%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAA---------------------SNEGSIASAAGKQHNNHLL----------------LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQY 692
            GF+K  P +WEF +D FRRG R LL EI R+K  P   PA   AA                     S E  + S++       +L                + +ENE L+RE  QL  ++++ + L   +L  +S+Y
Sbjct:  108 GFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVTPPA-PAATTAAVAAAIPMALPVTTTRDGSPVLSGEEQVISSSSSPEPPLVLPQAPSGSGSGGVASGDVGDENERLRRENAQLARELSQMRKLCNNILLLMSKY 243          
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.282e-25
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 2
Query:   83 PAPFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            PAPFL KTY+++   DD    +IVSW+A  + F+VW+ AEFS L+LP YFKHNNFSSFIRQLNTY
Sbjct:   21 PAPFLVKTYEMV---DDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTY 82          

HSP 2 Score: 43.1282 bits (100), Expect = 4.282e-25
Identity = 29/114 (25.44%), Postives = 58/114 (50.88%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKQHNNHLLLMEENESLKRERLQLQMQIAEFKALEI---KLLDSLSQYMGNF-NHQNKL 722
            GF+K  P++WEF +D F +  +HLL  I R+K  P    ++  A+S +               +L E+ + L RE+  ++ ++ +FK  ++      + +++++ +  N Q KL
Sbjct:   83 GFRKIDPERWEFLNDDFIKDQKHLLKNIHRRK--PIHSHSHPPASSTD-----------QERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKL 183          
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.704e-24
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 2
Query:   89 PFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            PFL KTYDL+ E + DG   ++SW   G+ FVVW P+ F+  +LP +FKHNNFSSF+RQLNTY
Sbjct:   67 PFLSKTYDLVCEPELDG---VISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTY 126          

HSP 2 Score: 51.6026 bits (122), Expect = 2.704e-24
Identity = 27/84 (32.14%), Postives = 42/84 (50.00%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKQHNNHLLLMEENESLKRERLQLQMQIA 644
            GF+K    +WEF H+ F R  +HLL +IVR++S P+        +S E  +             L++E   LK+E LQ   Q++
Sbjct:  127 GFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSSPTQQSGLQPGSSGESGLDPELNTLRREKSALLQEVTRLKQEHLQTIEQMS 210          
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.730e-24
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   83 PAPFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            PAPFL KTY L+   DD     ++SWN  G  FVVW  AEF++ +LPKYFKHNNFSSF+RQLNTY
Sbjct:    7 PAPFLLKTYQLV---DDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTY 68          

HSP 2 Score: 44.669 bits (104), Expect = 2.730e-24
Identity = 35/124 (28.23%), Postives = 60/124 (48.39%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAAS------------NEGSIASAAGKQHNNHLL-----------LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYM 695
            GF+K  P +WEF ++ F+RG + LL  I R+K+  S  PA  K+ +            + GS ++++    N   +           L +ENE LK++   L  ++ + K    +L+  LSQY+
Sbjct:   69 GFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTST-PAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYV 191          
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.574e-24
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   83 PAPFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            P PFL KTYD++   DD    KIVSW+   + FVVW P EF++ +LPKYFKHNNFSSF+RQLNTY
Sbjct:   39 PPPFLVKTYDMV---DDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTY 100          

HSP 2 Score: 41.5874 bits (96), Expect = 4.574e-24
Identity = 30/100 (30.00%), Postives = 43/100 (43.00%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNE-------------GSIASAAGKQHNNHLLLMEENESLKRERLQLQMQIAEFK 653
            GF+K  P +WEF ++ F RG +HLL  I R+K      PA+  A   +             G  AS           L EE E LKR++  L  ++   +
Sbjct:  101 GFRKVDPDRWEFANEGFLRGQKHLLKSISRRK------PAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLR 194          
BLAST of CX292205 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.574e-24
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   83 PAPFLCKTYDLLQERDDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTY 277
            P PFL KTYD++   DD    KIVSW+   + FVVW P EF++ +LPKYFKHNNFSSF+RQLNTY
Sbjct:   37 PPPFLVKTYDMV---DDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTY 98          

HSP 2 Score: 41.5874 bits (96), Expect = 4.574e-24
Identity = 30/100 (30.00%), Postives = 43/100 (43.00%), Query Frame = 3
Query:  393 GFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNE-------------GSIASAAGKQHNNHLLLMEENESLKRERLQLQMQIAEFK 653
            GF+K  P +WEF ++ F RG +HLL  I R+K      PA+  A   +             G  AS           L EE E LKR++  L  ++   +
Sbjct:   99 GFRKVDPDRWEFANEGFLRGQKHLLKSISRRK------PAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLR 192          
The following BLAST results are available for this feature:
BLAST of CX292205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HSFB1_ARATH2.380e-2664.62Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFA1A_ARATH3.991e-2660.00Heat stress transcription factor A-1a OS=Arabidops... [more]
HFB2A_ARATH5.242e-2653.85Heat stress transcription factor B-2a OS=Arabidops... [more]
HFA1D_ARATH1.941e-2560.00Heat stress transcription factor A-1d OS=Arabidops... [more]
HFB2B_ORYSJ1.948e-2563.08Heat stress transcription factor B-2b OS=Oryza sat... [more]
HSFA5_ARATH4.282e-2564.62Heat stress transcription factor A-5 OS=Arabidopsi... [more]
HSFA3_ORYSJ2.704e-2458.73Heat stress transcription factor A-3 OS=Oryza sati... [more]
HSF24_SOLPE2.730e-2463.08Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HSF8_SOLPE4.574e-2463.08Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC4.574e-2463.08Heat shock factor protein HSF8 OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionC04011G02SK FlavFr1 Citrus clementina cDNA clone C04011G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292205 ID=CX292205; Name=CX292205; organism=Citrus clementina; type=EST; length=763bp
GGCAAAGAAATTTCTAGAGCTCAACAATGAAGGCACGAGCACGAATTCGT
CGACAAGCCAGTCGTCTCCAAGAACAAAGAATCCCGCTCCGTTTTTGTGC
AAGACGTATGATTTGTTACAAGAAAGAGATGATGACGGCAACAAGAAAAT
TGTTTCCTGGAACGCACAAGGAGATGGGTTTGTAGTATGGTCACCGGCTG
AGTTCTCGGAGCTCATGTTGCCTAAATACTTCAAGCACAACAATTTCTCT
AGCTTCATTCGCCAGCTTAATACCTATGTCAGCGTTAGCCTTAAATACTA
CATACATATATTTATATATAATATCCTTATTTACATCAATTTTGGCTTGG
TTTTGTTTTTGATCAACAATATTAGTATGTAATTTGTAGCAGGGATTCAA
GAAGACATCACCGAAGCAATGGGAATTTAGGCACGACAAGTTTCGGAGGG
GCTGCAGGCATTTGTTAGTGGAGATTGTTAGAAAGAAAAGTGATCCCAGC
GTGTTTCCAGCTTACTTGAAGGCAGCTTCTAATGAAGGGAGTATTGCATC
AGCTGCCGGGAAGCAACATAATAATCACTTGTTACTCATGGAGGAGAATG
AGAGTCTAAAGAGAGAGAGGCTGCAGCTGCAGATGCAAATTGCTGAATTT
AAAGCACTAGAAATTAAGTTGTTGGATTCTCTTTCTCAGTACATGGGGAA
TTTTAATCATCAGAATAAGTTAGGAGATTGTGTTAACCACAACTTTGCAC
ATTAAATGTGTCT
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