CX292209

Overview
NameCX292209
Unique NameCX292209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292209_ssr248 microsatellite CX292209_ssr248:248..262. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10663 contig Ccv1_Contig10663:798..1511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX292209 vs. ExPASy Swiss-Prot
Match: NAC2_ARATH (NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    4 SSCSEHVVSPEFTCEVQSEPKMQPW-------ENTLGFPYNYLDSAMDISFNSQLQGNNQLSPLQDMFMYFTKPF 207
            SSCSE VVSPEFT EVQSEPK + W        NTL F +NY+D+ +D +F      +NQ+ PLQDMFMY  KP+
Sbjct:  216 SSCSEQVVSPEFTSEVQSEPKWKDWSAVSNDNNNTLDFGFNYIDATVDNAFGGG-GSSNQMFPLQDMFMYMQKPY 289
The following BLAST results are available for this feature:
BLAST of CX292209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAC2_ARATH1.296e-1454.67NAC domain-containing protein 2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC04011G07SK FlavFr1 Citrus clementina cDNA clone C04011G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292209 ID=CX292209; Name=CX292209; organism=Citrus clementina; type=EST; length=714bp
GTCTCGAGTTGCTCGGAGCACGTGGTGTCACCGGAGTTCACGTGCGAGGT
GCAGAGCGAGCCTAAAATGCAACCCTGGGAAAACACCCTTGGTTTTCCAT
ATAATTACTTGGATTCCGCCATGGACATAAGCTTCAATTCTCAGTTGCAG
GGAAACAATCAGCTGTCGCCGTTGCAGGATATGTTCATGTACTTTACGAA
ACCCTTTTAAATTTGGGTCGAGTGGATGGACCATAGACGGGATGGGATGG
GCTGGGCTGGGCTGGCCTTGAAAGAGGTAACACGAGACGAAAGTCAATGA
GTGTGCCTGTGCGGTGCGGGGCCCAGTTGACGATATAGTAAGCCCTACGT
TCTTTCGGACGATTGATCTGATTGATCGGACGGTTAACGCTGGATTTGCA
AGCATATAATCATTAATCATTAGCATGTGTACAGCACGCGGCATGTGATG
ATGTTAAAATGTTTTAATTTTTCTTTTTTTTTTAGGAAGTTATTAAATTT
AGTGTTCCAAAAATGTTATATCAAATCAGTAGTGTGTCTTATTTGTTTTA
TCAAATTATTACGTGGGGTTCTTTAAGTTACTGTTAATCAGCAGTGTGTC
TTATTTGGTTCACATTCTCGCTTGTCAGTGAAACCACGTAGCCGGTGGTG
ACCGTTTTAGAAACTGATGTATGATTACTACTGTTGTCAGCGTCCTTTGG
ATCATCATTTCACA
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