CX292217

Overview
NameCX292217
Unique NameCX292217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292217_ssr252 microsatellite CX292217_ssr252:252..263. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10262 contig Ccv1_Contig10262:11..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX292217 vs. ExPASy Swiss-Prot
Match: YUID_BACSU (Uncharacterized membrane protein yuiD OS=Bacillus subtilis GN=yuiD PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 2 
Query:  365 KRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVC----------EFPPDHPLSSVRPLRELLGHTPLQVVAGGILGCVVAFL 697
            ++ D   +  +GGMPSSHSA V+AL+  + L+ G  S  FA++ + A I M+DA+GVR HAG QA ++N++V           +FP        + L+ELLGH P++V  GG+ G ++  +
Sbjct:   32 RKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTLV 152
The following BLAST results are available for this feature:
BLAST of CX292217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YUID_BACSU4.147e-1838.02Uncharacterized membrane protein yuiD OS=Bacillus ... [more]
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Properties
Property NameValue
Genbank descriptionC04011H03SK FlavFr1 Citrus clementina cDNA clone C04011H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292217 ID=CX292217; Name=CX292217; organism=Citrus clementina; type=EST; length=698bp
TTCACTCCTCGTTAGAGAGAGAAAGAGGAGAGGGAGGTGGTGTGATTGTG
GTTGTGTTTGTGGTCGTGGTCGTGGTTGTGGTTGTGCGAACTGTAAATTT
TGAACTGTTGGGGATCGTCTCATCCAATAATTTTGGTGAAGAGAAAGCGG
AAAATTAAAAAAAAATTAAAATAATGGATGAGGTGATTACAGTAGGAGAT
GCGGCGTCGTTTAGGAGTGGTCAAGCGACGTCCTTTTTGGATTCTCCTCC
ATCGTCGTCGTCGCTGTTCTTCCCTAACAACCTCCCTCTGATCTCCGCAT
TTCTCGCCTTTGCTCTTGCTCAATTCCTCAAGATCTTCACCACTTGATGC
TCAGGTATAAAGAAAAGAGATGGGATTCTAAAAAGATGCTTGACTCTGGT
GGAATGCCTTCGTCACATTCTGCTACTGTGTCGGCTCTAGCAGTAGCTAT
TGGTCTGCAAGAAGGGTCAGGAAGTCCATCTTTTGCCATTGCAGTGGTCT
TGGCTTGCATTGTAATGTATGATGCCTCTGGGGTCAGACTACATGCTGGT
CGGCAAGCTGAATTGCTGAATCAAATAGTATGTGAGTTTCCTCCAGACCA
CCCATTGTCTAGCGTTAGACCTCTACGTGAATTACTTGGTCATACCCCGT
TACAGGTTGTGGCCGGTGGTATTTTGGGATGCGTTGTAGCGTTTCTGA
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