CX292220

Overview
NameCX292220
Unique NameCX292220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292220 vs. ExPASy Swiss-Prot
Match: DIOXL_ARATH (4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana GN=At4g15093 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.565e-71
Identity = 131/175 (74.86%), Postives = 145/175 (82.86%), Query Frame = 3
Query:  150 VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLL-KASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRAL 671
            V  TFF+SHGSPTLSID+SL AR F ++W  KV  Q+P SILVISAHWDT FPSVN V RN+TIHDF GFP  MY LKY APGA EL KRVK+LL K  G+K V+ED KRGLDHGAWVPLMLMYPEADIP+CQLSVQ +  G+YHYN+GKALA LK+EGVLIIGSGSATHNLR L
Sbjct:    4 VNQTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNTVLRNNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPLMLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKL 178          
BLAST of CX292220 vs. ExPASy Swiss-Prot
Match: DODA_PORGR (4,5-DOPA dioxygenase extradiol OS=Portulaca grandiflora GN=DODA PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.418e-52
Identity = 97/176 (55.11%), Postives = 122/176 (69.32%), Query Frame = 3
Query:  129 GQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATH 656
            G    +S  ++FF+SHG+P +  DES  AR FL  W+  VF  +P SILV+SAHW+TD P V+  Q  + I+DF   P  M+ +KYPAPG P+LAKRV++LL A G K    D +RG DH +WVPL +M PEADIPVCQLSVQ     T+H+N+G+ALAPLK EGVL IGSG A H
Sbjct:    2 GVGKEVSFKESFFLSHGNPAMLADESFIARNFLLGWKKNVFPVKPKSILVVSAHWETDVPCVSAGQYPNVIYDFTEVPASMFQMKYPAPGCPKLAKRVQELLIAGGFKSAKLDEERGFDHSSWVPLSMMCPEADIPVCQLSVQPGLDATHHFNVGRALAPLKGEGVLFIGSGGAVH 177          
BLAST of CX292220 vs. ExPASy Swiss-Prot
Match: YGID_ECOLI (Uncharacterized protein ygiD OS=Escherichia coli (strain K12) GN=ygiD PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 70/174 (40.23%), Postives = 109/174 (62.64%), Query Frame = 3
Query:  153 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFS-QRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRAL 671
            M   F+ HGSP   ++++L    + ++WQ    +  RP +I+V+SAHW T    V  ++   TIHDF GFP+ +YD  YPAPG+P LA+R+ +LL  + I    +    G DHG+W  L+ MYP+ADIP+ QLS+       +H+ +G+ LA L++EG++++ SG+  HNLR +
Sbjct:    6 MPALFLGHGSPMNVLEDNL----YTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELL--APIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTV 173          
BLAST of CX292220 vs. ExPASy Swiss-Prot
Match: DIOXL_SCHPO (4,5-DOPA dioxygenase extradiol-like protein OS=Schizosaccharomyces pombe GN=SPBC1709.16c PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 59/193 (30.57%), Postives = 94/193 (48.70%), Query Frame = 3
Query:  150 VMDTFFISHGSPTLSIDESLPARGF-----LQAWQAKVFSQ---------RPNSILVISAHWDTDFPSVNVVQRNDT---IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEA-DIPVCQLSVQMHHTGTYH-YNIGKALAPLKEEGVLIIGSGSATHNLRAL 671
            ++   +++HGSP L + +S     F     L     +   Q         RP  I+V SAH+++   SV V  R+D     +D+YGFP  +Y +K+ + G+  +A ++   LK   I        RGLDHG +VP  +M+P+  +IP+  + V MH       Y +G+AL  L++E  LI+  G   H    L
Sbjct:   10 LIPALYLAHGSPFLMLPQSSDDEVFSNDSKLGGLHYQFLEQLGPFLLEKFRPKGIIVFSAHYESR-GSVEVYSRDDENPLFYDYYGFPDYLYQIKFHSKGSKRIADQIISALKEYQIPAKTVSGDRGLDHGVFVPFKIMFPDGLNIPL--IEVSMHTLDPMQLYKVGQALQSLRKE-YLIVSGGLNIHTFEDL 198          
The following BLAST results are available for this feature:
BLAST of CX292220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DIOXL_ARATH9.565e-7174.864,5-DOPA dioxygenase extradiol-like protein OS=Ara... [more]
DODA_PORGR3.418e-5255.114,5-DOPA dioxygenase extradiol OS=Portulaca grandi... [more]
YGID_ECOLI9.351e-3440.23Uncharacterized protein ygiD OS=Escherichia coli (... [more]
DIOXL_SCHPO5.699e-1530.574,5-DOPA dioxygenase extradiol-like protein OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionC04011H06SK FlavFr1 Citrus clementina cDNA clone C04011H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292220 ID=CX292220; Name=CX292220; organism=Citrus clementina; type=EST; length=705bp
TGATGAGGCAGAAGATTCCAGTTATTGCTGCAAAGGCACGAAACTTTTTC
TTATTCTTTTTTCTTATAAATTCAGTTACTCTTTTCATTTTCATTCATTA
TTCTGCAAATCCATCGAACGTCACACGTGGGCAACAGTCACGGTTGAGTG
TGATGGACACATTCTTCATATCACATGGATCGCCGACGTTGTCTATCGAC
GAGTCGCTGCCGGCAAGGGGTTTCTTACAGGCATGGCAAGCGAAGGTCTT
CTCACAGAGACCCAATTCAATTCTGGTGATATCTGCTCATTGGGATACCG
ATTTTCCCTCTGTCAACGTCGTTCAGCGAAACGATACCATCCACGATTTC
TATGGCTTCCCCAAACAGATGTATGATCTCAAGTATCCTGCACCAGGAGC
TCCAGAACTGGCAAAGAGGGTCAAAGATTTGCTCAAAGCATCTGGCATCA
AGCACGTTAATGAAGATAGAAAACGTGGGCTTGACCATGGTGCGTGGGTT
CCACTCATGCTAATGTATCCAGAAGCTGATATTCCTGTGTGCCAGCTCTC
AGTTCAGATGCATCATACTGGAACTTATCATTACAACATAGGCAAAGCAT
TGGCCCCTCTCAAGGAGGAAGGAGTCCTCATAATTGGTTCTGGAAGTGCG
ACACACAACCTCAGGGCTCTTCATTTGAAAGCAGTTCCATTTCATCATGG
GCTTT
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