CX292222

Overview
NameCX292222
Unique NameCX292222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292222_ssr499 microsatellite CX292222_ssr499:499..510. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: P4R3B_MOUSE (Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Mus musculus GN=Smek2 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.676e-23
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    +  K NL +P+++A + NG RYNLLNSAV+ELFE+IR E++KSL  +IV++F+  L + EY+ +    K KYEQ  E    N   NSV       R R D +ALE++EE +FN+ D+E+
Sbjct:  570 DEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQ--EKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDDDEE 692          
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: P4R3B_HUMAN (Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Homo sapiens GN=SMEK2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    +  K NL +P+++A + NG RYNLLNSAV+ELFE+IR E++KSL  +IV++F+  L + EY+ +    K KYEQ  E    N   NSV       R R D +ALE++EE +FN+ +EE+
Sbjct:  602 DEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQ--EKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDEEEE 724          
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: P4R3B_XENLA (Serine/threonine-protein phosphatase 4 regulatory subunit 3-B OS=Xenopus laevis GN=smek2-B PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    + +K NL +P++ A + NG RYNLLNSA++ELFE+IR E++KSL  +IV++F+  L + EY+ +    K +YEQ  E    +   +SV       R R D RALE +EE +FN+ DEE+
Sbjct:  570 DEFYNRYIIKGNLFEPVIHALLDNGTRYNLLNSAIIELFEFIRVEDIKSLTSHIVENFYKALESIEYVQTFKGLKTRYEQ--EKDRQSQKLSSVPSILRSNRFRRDARALEDDEELWFNEDDEEE 692          
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: PP4R3_XENTR (Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus tropicalis GN=smek2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22
Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    + +K NL +P+++A + NG RYNLLNSA++ELFE+IR E++KSL  +IV++F+  L + EY+ +    K +YEQ  E    +   +SV       R R D RALE +EE +FN+ +EE+
Sbjct:  570 DEFYNRYIIKGNLFEPVINALLDNGTRYNLLNSAIIELFEFIRVEDIKSLTSHIVENFYKALESIEYVQTFKGLKTRYEQ--EKDRQSQKLSSVPSILRSNRFRRDARALEDDEELWFNEDEEEE 692          
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: P4R3A_XENLA (Serine/threonine-protein phosphatase 4 regulatory subunit 3-A OS=Xenopus laevis GN=smek2-A PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    + +K NL  P+++A + NG RYNLLNSA++ELFE+IR E++KSL  +IV++F+  L   EY+ +    K +YEQ  E    +   +SV       R R D RALE +EE +FN+ DEE+
Sbjct:  570 DEFYNRYIIKGNLFDPVINALLDNGTRYNLLNSAIIELFEFIRVEDIKSLTSHIVENFYKALEPIEYVQTFKGLKTRYEQ--EKDRQSQKLSSVPSILRSNRFRRDARALEDDEELWFNEDDEEE 692          
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: PP4R3_XENLA (Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus laevis GN=smek1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 53/125 (42.40%), Postives = 83/125 (66.40%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    + VK+ L +P+V AF+ NG+RYNL+NSA+LE+FEYIR E++KSL  ++V+++W  L + EY+ +    K++Y+Q  E    N   +S+     + R R D R++E EEE +FN +DE+D
Sbjct:  554 DEFYNRYIVKSFLFEPVVKAFLNNGSRYNLMNSAILEIFEYIRVEDIKSLTAHVVENYWKALEDVEYVQTFKGLKLRYDQQRERQ-DNPKLDSMRSILRNHRYRRDARSIEDEEEMWFN-TDEDD 676          
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: PP4R3_DANRE (Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Danio rerio GN=smek1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20
Identity = 52/125 (41.60%), Postives = 82/125 (65.60%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    + ++N L +P+V AF+ NG+RYNL+NSA++E+FEY+R E++KSL  +I++++W  L + +Y+ +    K++YEQ  E    N   +S+     + R R D R LE EEE +FN +DEED
Sbjct:  554 DEFYNRYIMRNFLFEPVVKAFLNNGSRYNLINSAIIEMFEYVRVEDVKSLTAHIIENYWKGLEDVDYVQTFKGLKLRYEQQRERQ-DNPKLDSMRSILRNHRFRRDARTLEDEEEMWFN-TDEED 676          
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: PP4R3_TETNG (Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Tetraodon nigroviridis GN=smek1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 51/125 (40.80%), Postives = 82/125 (65.60%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    + ++N L +P++ AF+ NG+RYNL+NSA++E+FEY+R E++KSL  +IV+++W  L + +Y+ +    K++YEQ  E    N   +S+     + R R D R LE EEE +FN +DE+D
Sbjct:  554 DEFYNRYIMRNFLFEPVIKAFLNNGSRYNLMNSAIIEMFEYVRVEDVKSLTAHIVENYWKALEDVDYVQTFKGLKLRYEQQRERQ-DNPKLDSMRSILRNHRFRRDARTLEDEEEMWFN-TDEDD 676          
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: P4R3A_MOUSE (Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Mus musculus GN=Smek1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19
Identity = 49/125 (39.20%), Postives = 82/125 (65.60%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    + +K+ L +P+V AF+ NG+RYNL+NSA++E+FE+IR E++KSL  ++++++W  L + +Y+ +    K+++EQ  E    N   +S+     + R R D R LE EEE +FN +DE+D
Sbjct:  554 DEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQ-DNPKLDSMRSILRNHRYRRDARTLEDEEEMWFN-TDEDD 676          
BLAST of CX292222 vs. ExPASy Swiss-Prot
Match: P4R3A_HUMAN (Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens GN=SMEK1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19
Identity = 49/125 (39.20%), Postives = 82/125 (65.60%), Query Frame = 3
Query:   30 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNFNSV-----DPRKRNDERALEKEEEDYFNDSDEED 389
            DE    + +K+ L +P+V AF+ NG+RYNL+NSA++E+FE+IR E++KSL  ++++++W  L + +Y+ +    K+++EQ  E    N   +S+     + R R D R LE EEE +FN +DE+D
Sbjct:  567 DEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQ-DNPKLDSMRSILRNHRYRRDARTLEDEEEMWFN-TDEDD 689          
The following BLAST results are available for this feature:
BLAST of CX292222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
P4R3B_MOUSE3.676e-2344.80Serine/threonine-protein phosphatase 4 regulatory ... [more]
P4R3B_HUMAN4.801e-2344.80Serine/threonine-protein phosphatase 4 regulatory ... [more]
P4R3B_XENLA4.065e-2243.20Serine/threonine-protein phosphatase 4 regulatory ... [more]
PP4R3_XENTR6.933e-2242.40Serine/threonine-protein phosphatase 4 regulatory ... [more]
P4R3A_XENLA9.055e-2243.20Serine/threonine-protein phosphatase 4 regulatory ... [more]
PP4R3_XENLA5.869e-2142.40Serine/threonine-protein phosphatase 4 regulatory ... [more]
PP4R3_DANRE1.308e-2041.60Serine/threonine-protein phosphatase 4 regulatory ... [more]
PP4R3_TETNG2.230e-2040.80Serine/threonine-protein phosphatase 4 regulatory ... [more]
P4R3A_MOUSE1.888e-1939.20Serine/threonine-protein phosphatase 4 regulatory ... [more]
P4R3A_HUMAN1.888e-1939.20Serine/threonine-protein phosphatase 4 regulatory ... [more]

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Properties
Property NameValue
Genbank descriptionC04011H08SK FlavFr1 Citrus clementina cDNA clone C04011H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292222 ID=CX292222; Name=CX292222; organism=Citrus clementina; type=EST; length=747bp
GGAATTCGGCACGAGGGCTCTCTCGCCATGATGAACATCTTATAAATCAT
TTTGTTAAGAACAATCTTCTCAAACCCATTGTAGATGCCTTTGTTGCTAA
CGGTAATCGATATAATCTGCTGAACTCAGCAGTTTTGGAACTTTTTGAGT
ACATCCGCAAGGAAAATCTTAAGTCATTGGTCAAATATATAGTTGATTCA
TTCTGGAATCAATTGGTTAATTTTGAGTATCTGGCATCCCTTCACTCTTT
TAAAGTTAAATATGAGCAGTGCTTAGAAAGTAGTGGAACCAACAATAATT
TTAATTCGGTGGATCCAAGAAAACGAAACGATGAGCGCGCTTTGGAGAAA
GAAGAGGAAGACTATTTTAATGACAGTGATGAAGAAGATACAGCATCTGC
CTCTCACACTCAGAGAGCTCAGGCTCAACCTGTTTTATCTAACGGAGTTG
CTGCGAGCTACTCATCCTTAAGTCCAAGATCCGGTGGACTTGTGGACTAT
GATGATGATGAAGATGATGAAGACTACAGACCACCACCTCGGAAACAGTC
GGAAACTTTGGAGGAGGATGAAGGAACAATGGATTCACTCAGGTTGAAAC
GTAAATCTGCTTCTTCCAAGGAAAAGGAGCCTGAGCTAGTAAAGAAGCAG
CGGTTGAGTAAGAATCCCAAGTCAAGAGATAGCGTATTTGCTGCCTTGTG
TTCACACTAAGCCAGGCAGTGCTACCAAGCAGAAAATGCAGCAGCAT
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