CX292224

Overview
NameCX292224
Unique NameCX292224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292224_ssr337 microsatellite CX292224_ssr337:337..348. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:350..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.124e-60
Identity = 112/129 (86.82%), Postives = 114/129 (88.37%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPD+DDDAF+
Sbjct:   81 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.124e-60
Identity = 112/129 (86.82%), Postives = 114/129 (88.37%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPD+DDDAF+
Sbjct:   81 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.512e-60
Identity = 111/129 (86.05%), Postives = 113/129 (87.60%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPD+DDDAFE
Sbjct:   93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.512e-60
Identity = 110/129 (85.27%), Postives = 113/129 (87.60%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPD+DD+ F+
Sbjct:   93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.242e-59
Identity = 111/129 (86.05%), Postives = 112/129 (86.82%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               SQPLPD+DDD FE
Sbjct:   93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.614e-59
Identity = 110/129 (85.27%), Postives = 113/129 (87.60%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPD+DD+AFE
Sbjct:   93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 6.165e-59
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D               +QPLPD+DDDAFE
Sbjct:   93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.373e-58
Identity = 109/129 (84.50%), Postives = 112/129 (86.82%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV ID               +QPLPD+DD+AFE
Sbjct:   93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.060e-58
Identity = 108/129 (83.72%), Postives = 111/129 (86.05%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID               +QPLPD+DDD FE
Sbjct:   93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.903e-58
Identity = 108/129 (83.72%), Postives = 111/129 (86.05%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +  LPD+DD+AFE
Sbjct:   93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221
The following BLAST results are available for this feature:
BLAST of CX292224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN1B_LOTJA1.124e-6086.82GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA1.124e-6086.82GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN_VICFA9.512e-6086.05GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANA1_TOBAC9.512e-6085.27GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH1.242e-5986.05GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC3.614e-5985.27GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH6.165e-5984.50GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC1.373e-5884.50GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH3.060e-5883.72GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RANB1_TOBAC8.903e-5883.72GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionC04011H10SK FlavFr1 Citrus clementina cDNA clone C04011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292224 ID=CX292224; Name=CX292224; organism=Citrus clementina; type=EST; length=690bp
GTTTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACC
GTGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAAC
AAGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCA
CAGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACA
ACTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCT
AACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAAT
CGATTTGGCTGCTCAGCAACAACATGAAGCTGAACTTGCTGCTGCTGCTA
GTCAACCTCTCCCAGATGAAGATGATGACGCCTTCGAGTGAAAGAAGACA
ATGGATCGTGTGATTATTGGAGTGAAGAGTTCAATATTGATTGTTTTGAG
GATCTGTTGGGTGTCTTTTGACATGAGCTTTGGATTGAACCATTGCTGGC
TTATTTAGCATTGTGTTTCTTACTCTTGCCTAATTCATGTCAGTCTCTAC
TTGTTTTTGTTTTCGCGTCTACATTCTCTGTTTACCAGCGGGGGAGCCAT
CCAATTTTCTGTAGGATGTTTAAATGATGCCCCATATCCTAGTTCATTTA
TATATTGTGTTGATAATTGAGGATTCATTTACTGCTTACC
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