CX292227

Overview
NameCX292227
Unique NameCX292227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_THEEB (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Thermosynechococcus elongatus (strain BP-1) GN=mnmG PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 92/226 (40.71%), Postives = 123/226 (54.42%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRMLTS                      RSE+RL+LRSDNAD RLTPLG E+GL+ + +W+V+Q K  R++ E +RL+T RI            A++   PV E                  +   +GQ +K +  LE LL++  + YE+LD+HG GN  L+  EK+ VEI IKY G+I R             RPLP DLDY+A+ TLS+E+REKLS +RP T
Sbjct:  429 EPYRMLTS----------------------RSEYRLVLRSDNADQRLTPLGYEIGLVSEAQWQVFQAKQRRLAAETQRLQTTRIK-----------AHE---PVGEA-----------------IVTATGQAIKSAIALEELLRRSGVHYELLDRHGLGNPDLTPQEKEAVEIAIKYAGYIERQQREIEQIARQEQRPLPVDLDYFAIPTLSMEAREKLSAIRPLT 601          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SYNJB (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Synechococcus sp. GN=mnmG PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.171e-35
Identity = 93/227 (40.97%), Postives = 120/227 (52.86%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAA-DVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRMLTS                      RSE+RL+LRSDNAD RLTPLGRE GLIDDRRW ++Q K AR++ E  RL+T R+                                   DLA   +++L+GQ +K S+TL  +L++  I Y  L + G G+  L   E++  EI +KY G+I R            HRPLPPDLDY+++ TLS ESR+KLS VRP T
Sbjct:  433 EPYRMLTS----------------------RSEYRLILRSDNADQRLTPLGREWGLIDDRRWALFQAKQARIAAEIERLETQRVKA--------------------------------HDLAGIQLSQLTGQGIKGSATLAEILRRNQIHYSDLLELGLGDAELDPFEQEAAEIAVKYSGYIQRQQSQIEQVSKQYHRPLPPDLDYHSIPTLSKESRDKLSAVRPLT 605          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SYNP2 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=mnmG PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.702e-35
Identity = 95/226 (42.04%), Postives = 119/226 (52.65%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRMLTS                      RSE+RL+LRSDNAD RLTPLGRE+GLI DRRW +YQ K   ++ EK RL T R+  L                  +  G+K         +AAD    +GQ +K S TL  LL++P   Y  L  +G GN  L++AE+   EIDIKY G+I R            +R LP  LDY  + TLS+E+REKL+KVRP T
Sbjct:  430 EPYRMLTS----------------------RSEYRLILRSDNADQRLTPLGREIGLIGDRRWALYQTKQENIAAEKERLHTERVKEL------------------DPLGQK---------IAAD----TGQKIKSSVTLADLLRRPKFHYADLASYGLGNEALTQAEQAGAEIDIKYSGYIKRQQNQIDQISRHANRKLPEGLDYLTVETLSMEAREKLNKVRPLT 602          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SYNJA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Synechococcus sp. (strain JA-3-3Ab) GN=mnmG PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.315e-35
Identity = 93/226 (41.15%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRMLTS                      RSE+RL+LR+DNAD RLTPLGRE GLIDDRRW ++Q K AR++ E  RL+T R+            A+D                         +++L+GQ +K S+TL  LL++  I Y  L + G GN  L   E++  EI +KY G+I R            HRPLPPDLDY+++ TLS ESREKL+ VRP T
Sbjct:  433 EPYRMLTS----------------------RSEYRLILRADNADQRLTPLGREWGLIDDRRWALFQAKQARIAAEIERLETQRVK-----------AHD--------------------PAGIHLSQLTGQGIKGSATLAELLRRNPIHYADLLELGLGNEELDPFEQEAAEIAVKYSGYIQRQQAQIEQVSKQYHRPLPPDLDYHSIPTLSKESREKLAAVRPLT 605          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ANASP (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Anabaena sp. (strain PCC 7120) GN=mnmG PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 92/226 (40.71%), Postives = 116/226 (51.33%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRMLTS                      RSE+RLLLRSDNAD RLTPLGRE+GLIDDRRW+++  K  +++ EK RL   R                    V E D           D+   +   + Q +K S TL  LL++P   Y  LD++G GN  L+ AEK+  EIDIKY G++ R             R LP DLDY  + TLS E+REKL+KV+P T
Sbjct:  431 EPYRMLTS----------------------RSEYRLLLRSDNADQRLTPLGREIGLIDDRRWQMFTRKQEQITGEKERLYATR--------------------VKEND-----------DVGKAIASNTQQAIKGSITLADLLRRPGFHYVDLDRYGLGNPELTPAEKEGAEIDIKYSGYLARQQSQIEQIARQAQRQLPGDLDYTTVDTLSKEAREKLNKVKPLT 603          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_TRIEI (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Trichodesmium erythraeum (strain IMS101) GN=mnmG PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.134e-34
Identity = 89/226 (39.38%), Postives = 119/226 (52.65%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRMLTS                      RSE+RL+LRSDNAD RLTPLGRE+GLIDDRRW++++ K A ++ EK RL + RI  L                                ++A ++   +   +K S TL  LL++P   Y  L+K+  GN  L   EK+  EIDIKY G++ R            +R LP +LDY +++TLSLE+REKLSKV+P T
Sbjct:  429 EPYRMLTS----------------------RSEYRLILRSDNADQRLTPLGREIGLIDDRRWELFESKQANINSEKSRLNSTRIKEL-------------------------------DEVAINIVADTHTKIKGSITLADLLRRPGFHYVDLEKYNLGNLDLKLVEKEGAEIDIKYSGYLQRQQNQIDQISRQKNRRLPTNLDYLSISTLSLEAREKLSKVQPLT 601          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_MICAN (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Microcystis aeruginosa (strain NIES-843) GN=mnmG PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.982e-34
Identity = 88/226 (38.94%), Postives = 121/226 (53.54%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRMLTS                      RSE+RL+LRSDNAD RLTPLGRE+GLID+RRW+++Q K A +  EK RL   RI                     E D            +A  + + + Q +K S +L  LL++P + Y  LD++G GN  ++ AE++ VEI+IKY G++ R            +R L PD+DY  + TLS+ESREKL+K++P T
Sbjct:  431 EPYRMLTS----------------------RSEYRLVLRSDNADQRLTPLGREIGLIDNRRWQLFQSKQANIIAEKERLHETRI--------------------KERD-----------QVAIAIVKDTEQKIKGSLSLADLLRRPSLHYLDLDRYGLGNPDINLAEREGVEIEIKYSGYLKRQQNQIDQISRHSNRHLSPDIDYMKIETLSMESREKLTKIKPAT 603          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SYNP6 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=mnmG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 88/226 (38.94%), Postives = 118/226 (52.21%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYR+LTS                      RSE+RLLLR+DNAD R+TPLGRE+GLIDDRRW +++ K AR++ E+ RL   R+                             E    G   A  T+    P+K S+TL  LL++P+  Y  L+ HG G+  L+ AEK+  EI IKY G++ R             RPLP DLDY A+T++ LE+REKL++ RP T
Sbjct:  425 EPYRVLTS----------------------RSEYRLLLRADNADQRMTPLGREIGLIDDRRWALFEQKQARIAAEQTRLTQQRVK----------------------------EHDPVGQAIAQQTQA---PIKGSATLADLLRRPNFHYIDLEAHGLGDPSLAIAEKEGAEIAIKYAGYLQRQQAQVDQVVRQSQRPLPVDLDYSAITSMRLEAREKLARFRPLT 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SYNE7 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Synechococcus elongatus (strain PCC 7942) GN=mnmG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 88/226 (38.94%), Postives = 118/226 (52.21%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYR+LTS                      RSE+RLLLR+DNAD R+TPLGRE+GLIDDRRW +++ K AR++ E+ RL   R+                             E    G   A  T+    P+K S+TL  LL++P+  Y  L+ HG G+  L+ AEK+  EI IKY G++ R             RPLP DLDY A+T++ LE+REKL++ RP T
Sbjct:  425 EPYRVLTS----------------------RSEYRLLLRADNADQRMTPLGREIGLIDDRRWALFEQKQARIAAEQTRLTQQRVK----------------------------EHDPVGQAIAQQTQA---PIKGSATLADLLRRPNFHYIDLEAHGLGDPSLAIAEKEGAEIAIKYAGYLQRQQAQVDQVVRQSQRPLPVDLDYSAITSMRLEAREKLARFRPLT 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ACAM1 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Acaryochloris marina (strain MBIC 11017) GN=mnmG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 89/226 (39.38%), Postives = 116/226 (51.33%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRMLT                       RSE+RLLLRSDNAD RLTPLGRE+GLIDDRRW ++  K A ++ EK RL   R+                     E D             A  + + +G+ +K S TL  LL++P   Y  L +HG G   L R+E++ VEI+IKY G+I R             R LP ++DY ++ TLS+E+REKL+KVRP T
Sbjct:  431 EPYRMLTG----------------------RSEYRLLLRSDNADQRLTPLGREVGLIDDRRWHLFTRKQATITAEKERLHATRLK--------------------ERD-----------PAAQAIVQTTGEKIKGSITLSDLLRRPKFHYCDLQQHGLGIETLERSERESVEIEIKYAGYIQRQQRQIEQVSRQEQRKLPENIDYASIETLSMEAREKLAKVRPLT 603          
The following BLAST results are available for this feature:
BLAST of CX292227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
MNMG_THEEB4.373e-3640.71tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SYNJB2.171e-3540.97tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SYNP23.702e-3542.04tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SYNJA6.315e-3541.15tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ANASP2.400e-3440.71tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_TRIEI3.134e-3439.38tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_MICAN6.982e-3438.94tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SYNP61.556e-3338.94tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SYNE71.556e-3338.94tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ACAM11.556e-3339.38tRNA uridine 5-carboxymethylaminomethyl modificati... [more]

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Properties
Property NameValue
Genbank descriptionC04013A01SK FlavFr1 Citrus clementina cDNA clone C04013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292227 ID=CX292227; Name=CX292227; organism=Citrus clementina; type=EST; length=695bp
AATTGGCACGAGGGCGAGCCTTACCGCATGTTGACAAGTTTAGGGACAGA
AAAATGCCCCACTGTGTAATGAAGCTGTGACTAGAAGGAGAATACTGTTG
AAAGCCGCTCAGAACATCGATTGCTTCTTAGATCCGATAATGCTGATAGC
CGTCTCACACCTTTGGGTCGTGAACTTGGGTTAATAGATGATAGACGGTG
GAAAGTATACCAGGATAAGCTAGCTCGAGTTTCAGAGGAAAAAAGGCGAT
TGAAAACTGTGAGGATATCAGGTTTGTATTCTTCATTGCCCTCCTTGTGG
ATGGCAAATGATTGTGTCTTACCAGTGAGTGAGGGAGATGGAGAAAAATC
TACAGAGGAGGGAATATGTGGAGATTTGGCTGCTGATGTTACTCGATTGT
CTGGTCAGCCAGTGAAGGACTCGTCAACTCTCGAGAGCCTACTGAAGAAA
CCACATATTCAATATGAAATACTTGATAAGCATGGTTTTGGAAATGGATT
GCTAAGTAGAGCTGAGAAACAATGTGTAGAGATAGACATAAAGTATGAGG
GCTTCATTGTGCGTCAGCAAAGCCAACTTCAACAGATGGTCCATCAACAA
CATAGACCACTTCCTCCGGACTTGGATTACTATGCAATGACAACTTTATC
TCTGGAATCACGTGAGAAACTATCTAAGGTCAGGCCACAGACGAT
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