CX292228

Overview
NameCX292228
Unique NameCX292228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14528 contig Ccv1_Contig14528:92..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RK28_ARATH (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.951e-46
Identity = 101/154 (65.58%), Postives = 115/154 (74.68%), Query Frame = 3
Query:   18 MATMATPGGVLLGNTSNLPCRRPRLXXXXXXXXXXXXEELGFVTSQLSGIKISYRLPDVATPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRKE 479
            M TMAT G  L   +S     +  +            +ELGF+TSQLSG++ISY   DV   IS   F PG+QPIVARR+CPFTGKK+N+ANKVSFSNHKT K QFVNLQYK+VWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKA IDLRK+
Sbjct:    1 MTTMATQGAWLRMTSSAKSMTKSTVTS----------KELGFLTSQLSGLRISYTPSDVINRISLPSF-PGIQPIVARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKK 143          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RK28_TOBAC (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.889e-41
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 3
Query:  132 ELGFVTSQLSGIKISYRLPDVATPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRKE 479
            EL FVTSQLSG+KIS      ++   S PF P LQP VARR+CPFTGKKSN+ANKVS SNHKT K QFVNLQYK++WWEAGKRYVKLRLSTKA+KTIEKNGLDAVAKKA IDL K+
Sbjct:   37 ELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQP-VARRICPFTGKKSNRANKVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSKK 151          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_THEEB (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmB PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TGKK+N A  +S S+ +T K Q VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+A +DL K
Sbjct:    3 RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERKGLSAFAKEAGLDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_CYAP4 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TGK++N A  VS S+ +T K Q VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++A IDL K
Sbjct:    3 RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHKGLDSFAREAGIDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNP2 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            R C  TGKK+N A  VS S+ +T K Q VNLQ+K+VWW  G R+V+LRLSTKA+KT+EK G+DA+A++A I+L K
Sbjct:    3 RKCQITGKKANNAMAVSHSHRRTKKLQEVNLQWKRVWWPEGNRFVRLRLSTKAIKTLEKKGIDAMAREAGINLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_CYAP7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7424) GN=rpmB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            R C  TGKK+N A  +S S+ +T + Q  NLQ+K++WWE GKR+VKLRLSTKA+KT+EK GL ++AK+A I+L +
Sbjct:    3 RHCELTGKKANNAFSISHSHRRTKRLQHANLQWKRIWWEEGKRWVKLRLSTKAIKTLEKKGLASMAKEAGINLNQ 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNP6 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TGKK+N A  +S S+ +T + Q VNLQ K++WW  G R+VKLRLSTKA+KT++K GL A A++  IDL++
Sbjct:    3 RVCQLTGKKANNAYAISHSHRRTKRLQNVNLQEKRIWWPEGNRFVKLRLSTKAIKTLQKKGLSAYARELGIDLKR 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNE7 (50S ribosomal protein L28 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TGKK+N A  +S S+ +T + Q VNLQ K++WW  G R+VKLRLSTKA+KT++K GL A A++  IDL++
Sbjct:    3 RVCQLTGKKANNAYAISHSHRRTKRLQNVNLQEKRIWWPEGNRFVKLRLSTKAIKTLQKKGLSAYARELGIDLKR 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_TRIEI (50S ribosomal protein L28 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            R C  TGKK+N    VS S+ +T K Q  NLQ+KKVWW  GK++VKL+LSTKA+KT++  G+ A+AK+A IDL K
Sbjct:    3 RKCQLTGKKANNGYSVSHSHIRTHKLQHANLQWKKVWWPQGKKWVKLKLSTKAIKTLQSKGIQAMAKQAGIDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_CYAP8 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 8801) GN=rpmB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            R C  TGKK+N A  VS S+ +T K Q  NLQ+K+VWW  G R+V+LRLSTKA+KT+E  GL  +AK+A I+L K
Sbjct:    3 RKCQLTGKKANNAYAVSHSHRRTKKLQEANLQWKRVWWPEGNRWVRLRLSTKAIKTLETKGLSVMAKEAGINLNK 77          
The following BLAST results are available for this feature:
BLAST of CX292228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RK28_ARATH1.951e-4665.5850S ribosomal protein L28, chloroplastic OS=Arabid... [more]
RK28_TOBAC1.889e-4175.8650S ribosomal protein L28, chloroplastic OS=Nicoti... [more]
RL28_THEEB1.556e-1960.0050S ribosomal protein L28 OS=Thermosynechococcus e... [more]
RL28_CYAP42.655e-1960.0050S ribosomal protein L28 OS=Cyanothece sp. (strai... [more]
RL28_SYNP27.725e-1958.6750S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_CYAP72.935e-1856.0050S ribosomal protein L28 OS=Cyanothece sp. (strai... [more]
RL28_SYNP61.115e-1754.6750S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_SYNE71.115e-1754.6750S ribosomal protein L28 OS=Synechococcus elongat... [more]
RL28_TRIEI1.457e-1756.0050S ribosomal protein L28 OS=Trichodesmium erythra... [more]
RL28_CYAP85.536e-1756.0050S ribosomal protein L28 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC04013A02SK FlavFr1 Citrus clementina cDNA clone C04013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292228 ID=CX292228; Name=CX292228; organism=Citrus clementina; type=EST; length=673bp
GGGCTGCACGCGAAAGAATGGCAACAATGGCGACACCGGGAGGAGTTTTA
TTGGGAAACACTTCCAATCTACCCTGTCGCCGCCCACGTCTGTCTCCGAA
GTCCATGGTTAAGGTAGTCTCCTCCTCGGAAGAACTGGGTTTCGTTACTT
CACAACTCAGTGGCATCAAAATTTCGTACCGCCTACCTGACGTGGCCACA
CCCATTTCCTCTCGTCCTTTCGCCCCGGGTCTTCAACCTATTGTTGCGCG
TAGAGTGTGCCCCTTCACTGGAAAGAAATCAAACAAGGCAAACAAAGTTT
CCTTCTCTAACCACAAGACAACTAAGCGGCAGTTTGTTAACCTACAGTAT
AAGAAGGTTTGGTGGGAGGCCGGCAAGCGTTATGTGAAGCTGCGTTTGTC
AACAAAGGCATTAAAGACGATAGAGAAAAATGGATTGGATGCTGTTGCTA
AGAAGGCTAGAATAGATCTTCGCAAGGAATGATATAGATGGTCTAACTAT
TTTTACCTATAGCTGTTGGTAAAGCTTGTATGCTCACTGTTTCTCTCGAA
ATTTAATTTCATGTTGCACTGTATCTTCTTTTTGCTTGTTCTGTTGAATT
CTTCCCAATTAAATGAGAATACTGATCATTAAAGCAAAAAAAAAAAAAAA
AAAATCGAGGGGGGGCCCGGTCC
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