CX292230

Overview
NameCX292230
Unique NameCX292230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4988 contig Ccv1_Contig4988:336..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292230 vs. ExPASy Swiss-Prot
Match: PNAE_RAUSE (Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.046e-28
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 3
Query:    3 KISVAVLVTAFMPDTTHRPSFVLEQYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQN 392
            KISVAV ++A MPD  H  ++  E+Y+EK     D  LD+QFS         +SM+ G +F+ +K++Q C  EDLELAKML RPGS+F  +L+K  KFS E YGSVKR Y+ C ED   P +FQ W +++
Sbjct:  103 KISVAVFMSAMMPDPNHSLTYPFEKYNEKCPA--DMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVES 230          
BLAST of CX292230 vs. ExPASy Swiss-Prot
Match: HNL_HEVBR (Hydroxynitrilase OS=Hevea brasiliensis GN=HNL PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.371e-19
Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 3
Query:    3 KISVAVLVTAFMPDTTHRPSFVLEQYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY---PVYEV 410
            KI+ AV   + +PDT H PS+V+++  E        W DT +            +  G   L   +Y LC PE+ ELAKML R GS+F + L+K   F+ EGYGS+K++Y+  ++D     +FQ W I+NY    VY+V
Sbjct:   96 KIAAAVFHNSVLPDTEHCPSYVVDKLMEVF----PDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKV 230          
BLAST of CX292230 vs. ExPASy Swiss-Prot
Match: HNL_MANES (Hydroxynitrilase OS=Manihot esculenta GN=HNL PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.382e-17
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 3
Query:    3 KISVAVLVTAFMPDTTHRPSFVLEQYSEKMGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDNLSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNY---PVYEV 410
            KI+  V   + +PDT H PS+ +E+  E        W DT+ F+  + +  +  +M  G   L   ++  C   + ELAKM++R GS+F + L++  KF+++GYGS+K+VY+  ++D      FQ W I NY    VY+V
Sbjct:   96 KIAAGVFHNSLLPDTVHSPSYTVEKLLESF----PDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQV 231          
BLAST of CX292230 vs. ExPASy Swiss-Prot
Match: PIR7A_ORYSJ (Probable esterase PIR7A OS=Oryza sativa subsp. japonica GN=PIR7A PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.045e-16
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    3 KISVAVLVTAFMPDTTHRPSFVLEQYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDN--LSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVYEV 410
            K++ AV + A MP         LE++  ++  + D ++D++    + +     ++L G + L  K+Y   PPEDL LA MLVRPG+ +ID+  +  E+  ++  YGSVKRV+LV  +D    ++ Q W I   P  EV
Sbjct:   98 KVAAAVFLAACMPAAGKHMGITLEEFMRRI--KPDFFMDSKTIVLNTNQEPRTAVLLGPKLLAEKLYNRSPPEDLTLATMLVRPGTNYIDDPIMKDETLLTEGNYGSVKRVFLVAMDDASSDEEMQRWTIDLSPGVEV 233          
BLAST of CX292230 vs. ExPASy Swiss-Prot
Match: PIR7A_ORYSI (Probable esterase PIR7A OS=Oryza sativa subsp. indica GN=PIR7A PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.045e-16
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    3 KISVAVLVTAFMPDTTHRPSFVLEQYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDN--LSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVYEV 410
            K++ AV + A MP         LE++  ++  + D ++D++    + +     ++L G + L  K+Y   PPEDL LA MLVRPG+ +ID+  +  E+  ++  YGSVKRV+LV  +D    ++ Q W I   P  EV
Sbjct:   98 KVAAAVFLAACMPAAGKHMGITLEEFMRRI--KPDFFMDSKTIVLNTNQEPRTAVLLGPKLLAEKLYNRSPPEDLTLATMLVRPGTNYIDDPIMKDETLLTEGNYGSVKRVFLVAMDDASSDEEMQRWTIDLSPGVEV 233          
BLAST of CX292230 vs. ExPASy Swiss-Prot
Match: PIR7B_ORYSJ (Esterase PIR7B OS=Oryza sativa subsp. japonica GN=PIR7B PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.015e-15
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 3
Query:    3 KISVAVLVTAFMPDTTHRPSFVLEQYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDN--LSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVYEV 410
            K++ AV V A MP          E++  +   E    +D +    + S  S +++  G  FL  K YQ  P EDL LAKMLVRPG+ F+D+  +  ES  ++  YGSVK+VY++ + D    ++ Q WM+   P  +V
Sbjct:  102 KVAAAVFVAAAMPCVGKHMGVPTEEFMRRTAPEG-LLMDCEMVAINNSQGSGVAINLGPTFLAQKYYQQSPAEDLALAKMLVRPGNQFMDDPVMKDESLLTNGNYGSVKKVYVIAKADSSSTEEMQRWMVAMSPGTDV 238          
BLAST of CX292230 vs. ExPASy Swiss-Prot
Match: PIR7B_ORYSI (Esterase PIR7B OS=Oryza sativa subsp. indica GN=PIR7B PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.015e-15
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 3
Query:    3 KISVAVLVTAFMPDTTHRPSFVLEQYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEDLELAKMLVRPGSMFIDN--LSKESKFSDEGYGSVKRVYLVCEEDIGLPKQFQHWMIQNYPVYEV 410
            K++ AV V A MP          E++  +   E    +D +    + S  S +++  G  FL  K YQ  P EDL LAKMLVRPG+ F+D+  +  ES  ++  YGSVK+VY++ + D    ++ Q WM+   P  +V
Sbjct:  102 KVAAAVFVAAAMPCVGKHMGVPTEEFMRRTAPEG-LLMDCEMVAINNSQGSGVAINLGPTFLAQKYYQQSPAEDLALAKMLVRPGNQFMDDPVMKDESLLTNGNYGSVKKVYVIAKADSSSTEEMQRWMVAMSPGTDV 238          
The following BLAST results are available for this feature:
BLAST of CX292230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PNAE_RAUSE1.046e-2847.69Polyneuridine-aldehyde esterase OS=Rauvolfia serpe... [more]
HNL_HEVBR3.371e-1937.41Hydroxynitrilase OS=Hevea brasiliensis GN=HNL PE=1... [more]
HNL_MANES5.382e-1734.29Hydroxynitrilase OS=Manihot esculenta GN=HNL PE=1 ... [more]
PIR7A_ORYSJ2.045e-1634.06Probable esterase PIR7A OS=Oryza sativa subsp. jap... [more]
PIR7A_ORYSI2.045e-1634.06Probable esterase PIR7A OS=Oryza sativa subsp. ind... [more]
PIR7B_ORYSJ1.015e-1534.78Esterase PIR7B OS=Oryza sativa subsp. japonica GN=... [more]
PIR7B_ORYSI1.015e-1534.78Esterase PIR7B OS=Oryza sativa subsp. indica GN=PI... [more]
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Properties
Property NameValue
Genbank descriptionC04013A04SK FlavFr1 Citrus clementina cDNA clone C04013A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292230 ID=CX292230; Name=CX292230; organism=Citrus clementina; type=EST; length=410bp
ACAAAATCTCCGTGGCTGTTTTGGTAACTGCATTCATGCCTGACACCACA
CACCGCCCATCTTTTGTTTTGGAGCAGTATTCTGAGAAGATGGGAAAAGA
GGACGACAGCTGGTTGGACACTCAATTTTCACAATGTGACGCGTCAAATC
CATCTCACATTTCCATGCTTTTCGGCCGCGAGTTCTTGACTATCAAGATC
TATCAGCTTTGTCCTCCTGAGGATCTGGAGCTGGCCAAGATGTTGGTGAG
GCCAGGATCAATGTTTATAGACAACTTATCGAAGGAAAGTAAGTTCAGCG
ATGAAGGATACGGATCTGTTAAGCGAGTTTATCTTGTATGCGAAGAGGAT
ATTGGTCTCCCTAAGCAATTTCAGCACTGGATGATCCAAAACTATCCCGT
TTATGAAGTG
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