CX292233

Overview
NameCX292233
Unique NameCX292233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig428 contig Ccv1_Contig428:175..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292233 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.678e-24
Identity = 65/178 (36.52%), Postives = 95/178 (53.37%), Query Frame = 2
Query:    5 VVKLSFLILALATKAQLGTSESEPVLDVYGNKVESNLEYKLLEVKNGTSGGFSIHGGTSGE-CPLDVVQLSSPTERDHYVRLLPFDNST-VVRESTDLNL-----------IEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVSIYNLVHCPSVCDSCVKLCNKVG 499
            VV L F   + +    +  + + PVLD  G+++++ ++Y +L   +G  GG    G  +G+ CP  VVQ  S  +    V     D+   VVR STD+N+              VW + NY++S GKW++TT G+ G PG  TL +WFK+EK  V  Y    CPSVCDSC  LC+ +G
Sbjct:    7 VVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLGYKFRFCPSVCDSCTTLCSDIG 184          
BLAST of CX292233 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 65/189 (34.39%), Postives = 96/189 (50.79%), Query Frame = 2
Query:    5 VVKLSFL----ILALATKAQLGTSES--EPVLDVYGNKVESNLEYKLLEVKNGTSGGFSIHGGTSGE---CPLDVVQLSSPTERDHYVRLLPFD-NSTVVRESTDLNL-----------IEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVS-IYNLVHCPSVCDSCVKLCNKVGIF 505
            ++ LSF     +LA A    L  ++S   PVLD+ G K+ +   Y ++ V     GG ++   T      CP  VVQ     + D  +   P +    VVR STDLN+              VW +  Y++S G++F+T GG+ G+PG +T+ +WFK+E+   S  Y LV CP+VC SC   C  VGI+
Sbjct:    6 MLSLSFFFVSALLAAAANPLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIY 194          
BLAST of CX292233 vs. ExPASy Swiss-Prot
Match: SPI5_SOLTU (Serine protease inhibitor 5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 54/172 (31.40%), Postives = 81/172 (47.09%), Query Frame = 2
Query:   62 SESEPVLDVYGNKVESNLEYKLLEVKNGTSGG--------------------FSIHGGTSGECPLDVVQLSS---PTERDHYVRLLPFDNSTVVRESTDLNLIEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVSIYNLVHCPSVCDSCVKLCNKVGIFY 508
            S++ PVLDV G +++  L Y+++ +  G  GG                    F+   G SG  P+  +  SS   P   +  +  + FD STV      L +   +W VG+Y+ SLG   L TGG IG   +    +WFK+ K S   YNL++CP   D   + C KVG+ +
Sbjct:   31 SDATPVLDVTGKELDPRLSYRIISIGRGALGGDVYLGKSPNSDAPCANGVFRFNSDVGPSGT-PVRFIGSSSHFGPHIFEGELLNIQFDISTV-----KLCVSYTIWKVGDYDASLGTMLLETGGTIGQADS----SWFKIVKSSQLGYNLLYCPFSSDD--QFCLKVGVVH 190          
The following BLAST results are available for this feature:
BLAST of CX292233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC3.678e-2436.5221 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.001e-2134.39Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
SPI5_SOLTU4.663e-1131.40Serine protease inhibitor 5 OS=Solanum tuberosum P... [more]
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Properties
Property NameValue
Genbank descriptionC04013A07SK FlavFr1 Citrus clementina cDNA clone C04013A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292233 ID=CX292233; Name=CX292233; organism=Citrus clementina; type=EST; length=680bp
ATTCGTAGTAAAACTCTCATTCCTTATCCTTGCCTTGGCCACAAAAGCTC
AGTTGGGCACCTCAGAATCTGAACCAGTCTTAGATGTCTATGGCAACAAG
GTCGAATCCAACCTCGAGTATAAGCTTCTCGAAGTCAAAAATGGCACTAG
TGGTGGATTCAGTATACATGGAGGCACAAGTGGAGAGTGTCCGTTGGACG
TTGTCCAACTAAGTTCTCCTACGGAAAGGGATCATTATGTAAGATTATTA
CCGTTTGACAATTCTACAGTTGTCCGGGAATCCACTGATCTCAACTTGAT
AGAACCAGTATGGACAGTTGGAAACTATAATGATTCATTAGGAAAATGGT
TTCTAACAACCGGCGGAATCATCGGCCACCCAGGAGCTAAAACGTTGCTA
AATTGGTTTAAGCTTGAGAAAGTTAGTGTCAGTATATACAATCTTGTTCA
TTGTCCATCTGTTTGCGATTCTTGCGTTAAACTCTGTAACAAAGTCGGCA
TCTTCTATGTGGACGGCGTTCGACGTCTAGTTCTGGTTCGTGATGATGAT
CAGCCTCTGCGGTTGGTGTTATTTCCAGCTCCTAATCCTTCAAGATCCTC
TATGTAATGAATTACCTAGCTATATTATATATTCTGAATATTTACCAGGC
TAGCTAGTACTCTAATCTCTATGATTATAG
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