CX292235

Overview
NameCX292235
Unique NameCX292235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:1305..1974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX292235 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 2 
Query:   20 HKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 148
            +KSQEGSQFCRGFGGIGG+LRYQLDMR+FDE S DGE+Y+DS+
Sbjct:  394 NKSQEGSQFCRGFGGIGGLLRYQLDMRTFDELS-DGEVYEDSD 435
[Close]
BLAST of CX292235 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 2 
Query:   20 HKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 148
            +KSQEGSQFCRGFGGIGG+LRYQLDMR+FDE SD  E+Y+DS+
Sbjct:  393 NKSQEGSQFCRGFGGIGGMLRYQLDMRTFDELSDT-EVYEDSD 434
[Close]
BLAST of CX292235 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 2 
Query:   20 HKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 142
            +KSQEGSQFCRGFGGIGGILRYQLDM +FD  S+DGE  DD
Sbjct:  395 NKSQEGSQFCRGFGGIGGILRYQLDMTAFD--SEDGEALDD 433
The following BLAST results are available for this feature:
BLAST of CX292235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ERF1Z_ARATH7.414e-1481.40Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH6.276e-1379.07Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH2.637e-1180.49Eukaryotic peptide chain release factor subunit 1-... [more]
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Properties
Property NameValue
Genbank descriptionC04013A09SK FlavFr1 Citrus clementina cDNA clone C04013A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292235 ID=CX292235; Name=CX292235; organism=Citrus clementina; type=EST; length=669bp
GCACACTCGAGTTTGTTACCACAAATCACAAGAGGGATCCCAGTTTTGCA
GAGGCTTTGGCGGTATTGGTGGAATACTCCGCTACCAGCTTGATATGAGA
TCATTTGATGAGTTTTCTGATGATGGAGAAATTTATGATGATTCTGAATA
GCAATCAATCAAACCTACCCAATTGCTGGTGCAGGATGACGACGTGAAGG
GCCTGCACCAGCGCGCGATTCGTCGCGCCAACTTCGGAGTACCTATGTTC
CAAAATGTTCCCAAGTTGCTGCTGAGGTACGATTATGTCATGTCTTAGCT
GAGCAAGCTATCTATGATTCTGTTATATGGGCTTTGTAATGGCGCTGCTG
GATATGATCCAGAAGGGAGGAATTATGCAAAGCTACTAGCTCCAGAAGGG
AGGAATTATGCAAAGCTACTAGCTAATGTTGGTTAGGACCTTACGAATAC
CTCGCATTCAGATGATGGATATGGGGATCTCTCCCATGGCAAGCCCTAGG
GGCTTGTGGATTGAAACTGTTCTCTCAGACTTGGGTTTATCTTTTTATGG
TTCTATTGTCTGTACAATGCATGTTAATCAGTGTGATGGATCTCCTGTTG
TCTGTCGGACTGGGTTATTTGTTTAAGGTTATGTTGTTTAAACATGCTTG
TTAGATCTCCATCTTTGGT
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