CX292238

Overview
NameCX292238
Unique NameCX292238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length483
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14224 contig Ccv1_Contig14224:68..550. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.143e-38
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   16 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 312
            VGLNKGH+VT++EL PRP  RKGKTSKR  F+R +I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GGG  EKKK
Sbjct:   12 VGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112          
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.798e-38
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   16 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 312
            VGLNKGH+VTK+E PPRP +RKGKTSKR  F+R +I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ G G  EKKK
Sbjct:    8 VGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108          
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.369e-37
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   16 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGG---GEKK 309
            VGLNKGH+VT++EL PRP  RKGKTSKR  F+R +IREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GG    EKK
Sbjct:   12 VGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112          
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.148e-30
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 1
Query:   16 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGE 303
            VGLNKGH VTKK   PRP+ RKG  S+RV  VR V+REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+  LRK +A   GE
Sbjct:    6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101          
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 4.050e-29
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 NSARGVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 255
            N+   VGLNKGHIVTKKEL PRP+DRKGKTSKR HFVR +IREVAGF PYEKRITELLKVGKDKRALKV + K+G H +  K+ E
Sbjct:    7 NTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90          
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.149e-26
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   16 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGEKK 309
            VGL KGH VTK E  PRP+ RKG  SK   FVR +IREV GFAP+E+R  ELLKV KDKRALK  K++LGTH R K+KR+E+SN L   R     ++K
Sbjct:    9 VGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106          
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.593e-25
Identity = 53/90 (58.89%), Postives = 75/90 (83.33%), Query Frame = 1
Query:   16 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 285
            VGLNKG ++TK++LP RP+ RKG+ SKR  FVR+++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:    7 VGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.905e-25
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   16 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 285
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.905e-25
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   16 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 285
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
BLAST of CX292238 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.032e-24
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   16 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 285
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
The following BLAST results are available for this feature:
BLAST of CX292238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL362_ARATH2.143e-3879.2160S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL363_ARATH2.798e-3879.2160S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL361_ARATH2.369e-3778.2260S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36_ENTCP2.148e-3069.7960S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36_DAUCA4.050e-2975.2960S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL36_IXOSC7.149e-2659.1860S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36A_SCHPO1.593e-2558.8960S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_XENTR7.905e-2562.2260S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]
RL36_XENLA7.905e-2562.2260S ribosomal protein L36 OS=Xenopus laevis GN=rpl... [more]
RL36_PONAB1.032e-2462.2260S ribosomal protein L36 OS=Pongo abelii GN=RPL36... [more]

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Properties
Property NameValue
Genbank descriptionC04013A12SK FlavFr1 Citrus clementina cDNA clone C04013A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292238 ID=CX292238; Name=CX292238; organism=Citrus clementina; type=EST; length=483bp
AATTCGGCACGAGGTGTTGGATTAAACAAGGGTCATATTGTGACGAAGAA
GGAACTGCCGCCACGCCCAGCAGATCGCAAAGGGAAAACAAGCAAAAGGG
TCCACTTCGTGAGGACTGTGATTAGGGAAGTTGCTGGCTTTGCACCCTAT
GAGAAAAGGATCACTGAGCTTCTTAAAGTCGGCAAGGACAAGAGGGCACT
GAAGGTTGCAAAGAGAAAGCTTGGCACTCACAAGAGGGCAAAGAAGAAGC
GGGAGGAGATGTCTAATGCCCTTCGCAAGAGTAGGGCCCCTGGAGGTGGA
GAGAAGAAGAAGTGATGCATAACTTTGCTAGATGTCTTGTTCACCTGAAC
TTGGGTTATTAAATTTAGCACAGTGTTTTAGCCTATGTTGTTTGCCTTTT
TTTCCCCTTCATTTCAAAAACTGAGTTAAAGATGTCAATTTGAGTGCTAC
AATGACCTTTACCTTTTTCCAGAGAGAAATTTA
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