CX292239

Overview
NameCX292239
Unique NameCX292239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length220
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX292239 vs. ExPASy Swiss-Prot
Match: ECA3_ARATH (Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.070e-19
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 2 
Query:   56 GAFDHLVDFVGRSYTASEFEELPAMQQTVALQHMALFTRVEPSHKRMLEEALQNQ 220
            GAFD+LVDF G SYTASEFE LPA+QQT+AL+ M LF+RVEPSHKRML EALQ Q
Sbjct:  629 GAFDNLVDFSGMSYTASEFERLPAVQQTLALRRMTLFSRVEPSHKRMLVEALQKQ 683

HSP 2 Score: 28.4906 bits (62), Expect = 2.070e-19
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 1 
Query:   13 GDNKSTAESICHKM 54
            GDNKSTAES+C K+
Sbjct:  615 GDNKSTAESLCRKI 628
The following BLAST results are available for this feature:
BLAST of CX292239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ECA3_ARATH2.070e-1978.18Calcium-transporting ATPase 3, endoplasmic reticul... [more]
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Properties
Property NameValue
Genbank descriptionC04013B01SK FlavFr1 Citrus clementina cDNA clone C04013B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292239 ID=CX292239; Name=CX292239; organism=Citrus clementina; type=EST; length=220bp
AATTCCACGAGGGGGGATAACAAGTCCACAGCTGAATCGATTTGTCACAA
GATGAGGCGCCTTTGATCACTTGGTAGATTTCGTTGGTCGCTCTTATACA
GCTTCTGAGTTTGAAGAACTTCCAGCAATGCAGCAAACTGTGGCATTGCA
GCATATGGCACTTTTCACCAGGGTTGAACCTTCTCATAAAAGAATGCTTG
AGGAGGCCCTACAAAACCAG
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