CX292245

Overview
NameCX292245
Unique NameCX292245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15412 contig Ccv1_Contig15412:386..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292245 vs. ExPASy Swiss-Prot
Match: ACYP_SPHWW (Acylphosphatase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=acyP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.027e-12
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   94 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDDPGT---GFVRKQTV 321
            ++R WT+E A +LGL GWVRNR DGSVEA+ +G  D V+EM  RC  G   + V  + V    D PG    GF +K TV
Sbjct:   24 WFRAWTVEQAAELGLDGWVRNRADGSVEAVAAGPADRVEEMIARCRRGSPASRVDSIDV---EDTPGVVAQGFTQKPTV 99          
BLAST of CX292245 vs. ExPASy Swiss-Prot
Match: ACYP_RHOFD (Acylphosphatase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=acyP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.369e-11
Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   94 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDD 288
            FYR   +  A  LGL+GWVRNR DGSVEA+  G    V  M +    GPS+AVVT + +FPS  D
Sbjct:   18 FYRGSMVSRANALGLRGWVRNRLDGSVEAVVQGEATEVNRMVEWARRGPSNAVVTSVNIFPSEGD 82          
BLAST of CX292245 vs. ExPASy Swiss-Prot
Match: ACYP_NITHX (Acylphosphatase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=acyP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.788e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   97 YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFP 276
            +R WT+  A +LG+ GWVRNRRDGSVEALF+G  D+V +M  RC +GP  A V  ++  P
Sbjct:   19 FRYWTMREAIRLGVAGWVRNRRDGSVEALFAGPADAVADMVARCRNGPGAARVDAVEDQP 78          
BLAST of CX292245 vs. ExPASy Swiss-Prot
Match: ACYP_RHORT (Acylphosphatase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=acyP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   94 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDDPGTGFVRKQTV 321
            +YR WT+E A  LGL GWVRNR DG+VEALF G   +V+ M   C  GP  A V  L+V P       GF +K ++
Sbjct:   16 WYRGWTVETAKGLGLAGWVRNRADGTVEALFHGPEAAVEAMLIACRGGPPSARVDDLRVTPVAAPDQPGFSQKPSL 91          
The following BLAST results are available for this feature:
BLAST of CX292245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ACYP_SPHWW8.027e-1248.10Acylphosphatase OS=Sphingomonas wittichii (strain ... [more]
ACYP_RHOFD1.369e-1150.77Acylphosphatase OS=Rhodoferax ferrireducens (strai... [more]
ACYP_NITHX1.788e-1153.33Acylphosphatase OS=Nitrobacter hamburgensis (strai... [more]
ACYP_RHORT3.050e-1147.37Acylphosphatase OS=Rhodospirillum rubrum (strain A... [more]
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Properties
Property NameValue
Genbank descriptionC04013B07SK FlavFr1 Citrus clementina cDNA clone C04013B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292245 ID=CX292245; Name=CX292245; organism=Citrus clementina; type=EST; length=550bp
CTCGTGCCGAATTCGGCACGAGGCATGACTGACACTCAATCTCCTCCCGC
CAAAACGGTGAGGGTTGTTGTAAAAGGCAGGGTGCAGGGTGTGTTCTACA
GGAACTGGACCATAGAGAATGCCACACAATTAGGGTTGAAAGGTTGGGTG
CGGAACAGGCGTGATGGTTCTGTAGAGGCTCTGTTTTCAGGGAACCCTGA
TTCTGTCAAGGAGATGGAGCAGAGGTGCTGCCATGGCCCATCAGATGCTG
TAGTTACAGGGCTCCAGGTCTTCCCATCCAATGATGATCCTGGTACGGGA
TTTGTGCGCAAACAAACTGTTTGATCAAACTCTGCGTATAGATTACTACT
GGTTTCCACTTTAATCATGTATACTGCATTCCTTTATACAAGTATTACAA
TAAACTCTCTTGAGGAATTATATCTGATGTACCCGCAGTCGCTTCTTTAT
CTTGTTGGACTACGTGTTACTGGATGACTTGTTACATTTGTGATATATTA
TTATCATTTCTTGAAAAAAAAAAAAAAAAAACCTCGAGGGGGGGCCCGGT
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