CX292246

Overview
NameCX292246
Unique NameCX292246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292246_ssr129 microsatellite CX292246_ssr129:129..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX292246 vs. ExPASy Swiss-Prot
Match: DNAJ8_ARATH (Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 61/148 (41.22%), Postives = 77/148 (52.03%), Query Frame = 2 
Query:  200 MARVAGTIGAKGSPGSSSSWTPLXXXXXXXXXXXXXXVICSASYSSSTPSVRDPYKTLRIQRGASESE-----------YHPDVCRGNNCGVQFHLINEPYDMVMNNFRGEPMEPEIMSHPYDGGIDDPFREMNDPDWD*WKEWMGWK 610
            +A   G  G  G PGSS S +                +  S    SS+ SV DPYKTL+I+  +SE E           YHPDVCRG+NCGVQF  INE YD+V+   + + ME      P+D   D+    MNDPD D W+EWMGW+
Sbjct:    3 IALTIGGNGFSGLPGSSFSSSSSSFRLKNSRRKNTKMLNRSKVVCSSSSSVMDPYKTLKIRPDSSEYEVKKAFRQLAKKYHPDVCRGSNCGVQFQTINEAYDIVLKQIKNQ-MEGTEEFEPFD-VYDEGLNGMNDPDCDTWEEWMGWE 148
The following BLAST results are available for this feature:
BLAST of CX292246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNAJ8_ARATH3.124e-2141.22Chaperone protein dnaJ 8, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC04013B08SK FlavFr1 Citrus clementina cDNA clone C04013B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292246 ID=CX292246; Name=CX292246; organism=Citrus clementina; type=EST; length=611bp
AATTCGGCACGAGGATTTATTATTAGTCCATCTAAATTCATCGTCATTGA
ATCTCATCTATCCAAAAAAGAAAAAAAAAAAAGAAAAAAATCAATTTTTG
CTTGGGGGATCTTTTGCTTTCAAAATATAAAGAAAGAAAGAAAGAAAGAA
AGATTAATGCTTGTTGCTGGCGGCTTTGTGAGTTTTTGATTTGAGAAAAA
TGGCAAGGGTTGCAGGGACAATCGGAGCAAAGGGGTCGCCGGGTTCATCA
TCTTCATGGACTCCGCTGAAAAATTGGAAAAAAAAAAAAATGATGATGGG
CAAAGCCAAGGTCATTTGCTCAGCTTCTTATTCATCTTCAACGCCTTCGG
TGAGGGATCCTTACAAAACTCTCAGGATTCAACGGGGTGCCTCTGAATCT
GAGTATCATCCGGATGTATGCAGAGGAAACAATTGTGGAGTTCAGTTTCA
TCTGATTAATGAACCCTATGATATGGTGATGAATAATTTCAGGGGGGAAC
CCATGGAACCGGAGATTATGTCCCACCCGTACGATGGAGGAATTGATGAC
CCGTTTAGGGAAATGAACGACCCAGATTGGGATTAATGGAAGGAGTGGAT
GGGGTGGAAAG
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