CX292259

Overview
NameCX292259
Unique NameCX292259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig750 contig Ccv1_Contig750:31..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX292259 vs. ExPASy Swiss-Prot
Match: SRRT_ARATH (Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 71/162 (43.83%), Postives = 84/162 (51.85%), Query Frame = 2 
Query:    2 IRHEVKDERGNRRDRDYRPNGSDRYDRSDNAQASDFPSNDDVPEGANRDESMFDTFGGQGIRVAXXXXXXXXXXXXXXXXXXXXXXXXFVPTPPEVAMHMIRDQXXXXXXXXXXXXXXXXXXXXXXXXLLSPAFRQDPRRIRSYQDLDAPEDEVTVMDYRSL 487
            + + ++D+RG RR+RD R NG+DR DRS++ Q  D   ND    G N  E  +D FGGQG                            FVP PPEVAM M RD                         LLSPAFRQDPRR+RSYQDLDAPE+EVTV+DYRSL
Sbjct:  572 MENRLRDDRGGRRERDGRANGNDRNDRSEDQQRGD---ND----GGNPGEVGYDAFGGQGGVHVPPFLSDINPPPMLMPVPGAGPLGPFVPAPPEVAMQMFRDPSGPNPPFEGSGRGGPAPF------LLSPAFRQDPRRLRSYQDLDAPEEEVTVIDYRSL 720
The following BLAST results are available for this feature:
BLAST of CX292259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SRRT_ARATH4.536e-2543.83Serrate RNA effector molecule OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC04013C09SK FlavFr1 Citrus clementina cDNA clone C04013C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292259 ID=CX292259; Name=CX292259; organism=Citrus clementina; type=EST; length=694bp
AATTCGGCACGAGGTGAAAGATGAACGTGGTAACCGTAGAGATCGTGACT
ATCGGCCTAATGGCAGTGATAGATACGATAGGTCTGATAATGCACAGGCA
AGTGATTTTCCTTCCAATGATGATGTTCCTGAAGGGGCAAATCGCGATGA
ATCGATGTTTGATACCTTTGGTGGACAAGGCATTCGTGTTGCTCCTCCTT
TTCCGTCAGATATACCTCCTCCACCAGTATTGATGCCTGTTCCTGGTGCT
GGTCCACTGGGGCCCTTTGTTCCAACGCCTCCTGAAGTCGCTATGCATAT
GATTAGAGATCAGGGTGGCCCTCCTTTTGAAGGGGGTGGTAGACACGGAC
GTCCTGGACCCCATATAAGTGGTCCAGGCCCTATTCTTTTATCTCCAGCC
TTTCGACAGGATCCTCGACGTATAAGAAGTTATCAAGACCTAGATGCACC
AGAGGATGAAGTTACTGTTATGGACTACAGGAGCTTGTAGATATCTTCTT
AACTGGTGGGATTTTGAAACAATTCAAGACAACTAGGATTGTATTGTAGT
GTTCCTGTTATTGAAGAAATCAGGTCTTTTGCTTGATTACCCATTGTGGA
CGTTGATTGCTGGCACCGTGCTTACATCCCGTCTGATGGTAGTGTTCTTT
GCTGCTGCAGCTGCAATATTGCCTGCCTGCGTAATCTGTGCTGG
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