CX292262

Overview
NameCX292262
Unique NameCX292262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9558 contig Ccv1_Contig9558:292..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292262 vs. ExPASy Swiss-Prot
Match: AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 83/252 (32.94%), Postives = 127/252 (50.40%), Query Frame = 1
Query:   16 FVRPDAVFNWKKPISGGVPHCFPQFGP-GPMQQHGFARNMDWSI-LDSENVEGNPVIT----LELKDGPYSRAMWDFSFQALFKVILNTK---SISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDPKNPVEGKEERDRVTFPGFVDCIYLDAPS-VVHLDNGLGDTITIRNTNWSDAVLWNPHMQM--------EACYKDFVCVENAKIGK-VQLEPEQSWTASSISASLKIAVC 714
            F+   A+F   K I GG+P C PQFG  G ++QHGFARN  WSI  D   +  NP I     L L+       +W  SF+   +V L      S+++ +  TNTD +PFS++ A HTYF   V+  S   ++G +T++   + K      E+ D + F   VD +YL APS +  +D+    T  +      DAV+WNP  +         +A YK+ +CVE A + K + L+P + W      +++  + C
Sbjct:   68 FLSSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAIKAFVDLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYF--FVSDISEVRVEGLETMDYLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIALSAVPSSYC 317          
BLAST of CX292262 vs. ExPASy Swiss-Prot
Match: YEAD_ECOLI (Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 73/236 (30.93%), Postives = 110/236 (46.61%), Query Frame = 1
Query:   55 ISGGVPHCFPQFGPGPMQ---QHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMW--DFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFR-ASVTGASVKGLKGCKTLNKDPDPKNPV--EGKEERDRVTFPGFVDCIYLDAP--SVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEAC--------YKDFVCVENAKIGKVQLEPEQSWTASSISASLKIA 708
            I GGVP C+P FGP   Q    HGFARN+ W++           +T EL     ++  W  DF+  A F+V    K+   +L      +  F  +SALHTYF    +   SV GL G + ++K  D K  V  +G +     TFP   D +YL+    SV++ D  L   I + + +  + V WNP   +           YK FVCVE A   + Q   ++    + ++ S+++A
Sbjct:   73 IRGGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSHHEDADGVALTFELTQSEETKKFWPHDFTLLAHFRV---GKTCEIDL----ESHGEFETTSALHTYFNVGDIAKVSVSGL-GDRFIDKVNDAKENVLTDGIQ-----TFPDRTDRVYLNPQDCSVIN-DEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETAYASETQKVTKEK--PAHLAQSIRVA 292          
BLAST of CX292262 vs. ExPASy Swiss-Prot
Match: YMY9_YEAST (Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae GN=YMR099C PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 67/245 (27.35%), Postives = 102/245 (41.63%), Query Frame = 1
Query:   31 AVFNWKKPISGGVPHCFPQFGP-------GPMQQHGFARNMDWSILDSENVEGNPVITLELKD---GPYSRAMWDFSFQALFKVILNTKSISTELTITNT-DNKPFSFSSALHTYFR-ASVTGASVKGLKGCK----TLNKDPDPKNPVEGKEERDRVTFPGFVDCIYLDAP---SVVHLDNGLGDTITIRNTNWSDAVLWNPHMQM---------EACYKDFVCVENAKIGK-VQLEPEQSWTA 678
            A  +  KP+ GG+P  FP FG          + QHG ARN  W  L  +  E  P +   LK     P    +W   +  +  V L +  + T + + NT  +K   F+   HTYFR   + G  V  L G K     L +    K+PV        VTF    D IY +     ++  +D G+    T++  N  D V+WNP ++          +  Y+  +C+E   +   + L P + W A
Sbjct:   48 AKLDGSKPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFL-GQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLLKESYVDKHPV--------VTFNQETDVIYQNVSAERAIQIVDKGV-QIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNA 282          
The following BLAST results are available for this feature:
BLAST of CX292262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AAPC_CENCI1.974e-2632.94Putative glucose-6-phosphate 1-epimerase OS=Cenchr... [more]
YEAD_ECOLI9.190e-1630.93Putative glucose-6-phosphate 1-epimerase OS=Escher... [more]
YMY9_YEAST5.957e-1527.35Glucose-6-phosphate 1-epimerase OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionC04013C12SK FlavFr1 Citrus clementina cDNA clone C04013C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292262 ID=CX292262; Name=CX292262; organism=Citrus clementina; type=EST; length=723bp
AATTCGGCACGAGGTTTTGTTAGACCTGATGCTGTTTTTAACTGGAAAAA
ACCTATCAGTGGAGGAGTTCCACATTGCTTCCCACAGTTTGGACCTGGCC
CAATGCAGCAGCATGGATTTGCAAGGAATATGGATTGGTCCATTCTTGAC
TCAGAAAATGTGGAAGGAAATCCTGTTATAACTCTGGAGCTAAAGGATGG
TCCTTACAGTCGTGCCATGTGGGATTTCAGTTTTCAAGCTTTATTCAAGG
TCATTCTAAATACCAAGAGTATTTCTACAGAGTTGACCATCACAAACACA
GACAACAAGCCATTTTCGTTTAGTTCTGCTTTGCACACATACTTCAGGGC
TTCTGTCACAGGAGCATCTGTGAAAGGTTTGAAAGGTTGCAAAACTTTAA
ATAAAGACCCAGATCCTAAAAATCCAGTGGAGGGAAAGGAGGAAAGGGAT
AGGGTCACTTTTCCTGGATTTGTAGATTGCATTTACCTTGATGCCCCGAG
TGTGGTACACCTTGACAATGGCTTGGGTGATACAATAACTATCCGCAATA
CAAATTGGTCAGATGCTGTTTTATGGAACCCACATATGCAGATGGAAGCA
TGCTACAAGGATTTTGTTTGCGTTGAAAATGCTAAGATTGGAAAAGTCCA
GCTAGAGCCAGAACAATCTTGGACGGCTAGCAGCATCTCAGCATCACTAA
AGATAGCCGTGTGCTTCTGATTT
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