CX292271

Overview
NameCX292271
Unique NameCX292271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10129 contig Ccv1_Contig10129:130..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 3
Query:  426 MGEALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGR 695
            MG  LMKRVMQTWLPASSALLEMMI HLPSP+TAQ+YRVENLYEGP+DD YA AIRNCDP GPLMLYVSKMIPASDKGRFFAFGRVF+G+
Sbjct:  313 MGRPLMKRVMQTWLPASSALLEMMIHHLPSPATAQRYRVENLYEGPMDDVYATAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGK 402          
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_CHLKE (Elongation factor 2 OS=Chlorella kessleri PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 73/90 (81.11%), Postives = 82/90 (91.11%), Query Frame = 3
Query:  426 MGEALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGR 695
            MG+ LMKRVMQTWLPA  ALLEMMI+HLPSP+ AQKYRV+ LYEGPLDD YA A+RNCD +GPLM+YVSKMIPA+DKGRF+AFGRVFSGR
Sbjct:  315 MGKPLMKRVMQTWLPAHEALLEMMIWHLPSPAKAQKYRVDVLYEGPLDDTYATAVRNCDADGPLMMYVSKMIPAADKGRFYAFGRVFSGR 404          
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 137.117 bits (344), Expect = 8.535e-32
Identity = 60/89 (67.42%), Postives = 77/89 (86.52%), Query Frame = 3
Query:  429 GEALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGR 695
            G+AL+K VM+TWLPA  ALL+M+  HLPSP  AQKYR+E LYEGP DD+ A A+++CDP+GPLM+Y+SKM+P SDKGRF+AFGRVF+G+
Sbjct:  318 GKALLKTVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAIAVKSCDPDGPLMMYISKMVPTSDKGRFYAFGRVFAGK 406          
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 3
Query:  429 GEALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGR 695
            G+ LMK  M+ WLPA   +L+M+ FHLPSP TAQKYR+E LYEGP DD+ A AI+ CDPNGPLM+Y+SKM+P SDKGRF+AFGRVFSG+
Sbjct:  326 GKPLMKVFMRKWLPAGDTMLQMIAFHLPSPVTAQKYRMEMLYEGPHDDEAAVAIKTCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGK 414          
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_CANAL (Elongation factor 2 OS=Candida albicans GN=EFT2 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 3
Query:  429 GEALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 692
            G+AL+K VM+ +LPA+ ALLEM++ HLPSP TAQ YR E LYEGP DD +  AIRNCDPN  LMLYVSKM+P SDKGRF+AFGRVF+G
Sbjct:  316 GKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAETLYEGPSDDPFCTAIRNCDPNADLMLYVSKMVPTSDKGRFYAFGRVFAG 403          
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 60/88 (68.18%), Postives = 75/88 (85.23%), Query Frame = 3
Query:  429 GEALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 692
            G+AL+K VM+ +LPA+ AL+EM++ HLPSP TAQ+YR E LYEGP+DD+ A  IRNCD N PLM+YVSKM+P SD+GRF+AFGRVFSG
Sbjct:  316 GKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRNCDANAPLMIYVSKMVPTSDRGRFYAFGRVFSG 403          
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 3
Query:  438 LMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 692
            L+K+VMQ WL A   LLEM++ HLPSP+ AQKYRVENLYEGP DD+ A  IRNCDP+ PL ++VSKM+P SDKGRF+AFGRVFSG
Sbjct:  309 LLKKVMQLWLSAGDTLLEMIVTHLPSPAAAQKYRVENLYEGPQDDETAKGIRNCDPDAPLCMFVSKMVPTSDKGRFYAFGRVFSG 393          
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 9.437e-31
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 3
Query:  429 GEALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 692
            G+ L+K VM+ +LPA+  LLEMMI HLPSP TAQ YR E LYEGP DD+ A AI+ CDP GPLMLYVSKM+P SDKGRF+AFGRVF+G
Sbjct:  317 GKQLLKAVMKAFLPAADCLLEMMILHLPSPVTAQAYRAETLYEGPQDDEAAMAIKTCDPKGPLMLYVSKMVPTSDKGRFYAFGRVFAG 404          
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_PICGU (Elongation factor 2 OS=Pichia guilliermondii GN=EFT2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 3
Query:  429 GEALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 692
            G+AL+K VM+ +LPA+ ALLEM++ HLPSP TAQ YR E LYEGP DD++  AIRNCDP   LMLYVSKM+P SDKGRF+AFGRVF+G
Sbjct:  316 GKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAETLYEGPSDDEFCTAIRNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAG 403          
BLAST of CX292271 vs. ExPASy Swiss-Prot
Match: EF2_RAT (Elongation factor 2 OS=Rattus norvegicus GN=Eef2 PE=1 SV=4)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 3
Query:  429 GEALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 692
            G+ L+K VM+ WLPA  ALL+M+  HLPSP TAQKYR E LYEGP DD+ A  I++CDP GPLM+Y+SKM+P SDKGRF+AFGRVFSG
Sbjct:  332 GKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSG 419          
The following BLAST results are available for this feature:
BLAST of CX292271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF2_BETVU5.897e-4187.78Elongation factor 2 OS=Beta vulgaris PE=2 SV=1[more]
EF2_CHLKE1.041e-3781.11Elongation factor 2 OS=Chlorella kessleri PE=2 SV=... [more]
EF2_DROME8.535e-3267.42Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_CAEEL1.456e-3168.54Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]
EF2_CANAL5.532e-3170.45Elongation factor 2 OS=Candida albicans GN=EFT2 PE... [more]
EF2_SCHPO7.226e-3168.18Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_CRYPV7.226e-3170.59Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
EF2_NEUCR9.437e-3170.45Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_PICGU1.233e-3069.32Elongation factor 2 OS=Pichia guilliermondii GN=EF... [more]
EF2_RAT1.610e-3068.18Elongation factor 2 OS=Rattus norvegicus GN=Eef2 P... [more]

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Properties
Property NameValue
Genbank descriptionC04013D10SK FlavFr1 Citrus clementina cDNA clone C04013D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292271 ID=CX292271; Name=CX292271; organism=Citrus clementina; type=EST; length=696bp
AATTCGGCACGAGGTCCAATTAAACCTCCGCCTTCTCCTCCATCTTCTTC
TCATCAGCATCGCGTTCCCGGATTGTTCGGGCTCGTAATGATTCTGGGAT
CCATCCTGAGTGCTCTGTTGTAAGCGCCCTTGATGGTTTGTTTGGTTTTA
TGTATGTGATTCTGGGATAGTCCTAAGTGTTTCTGTTATGTGCTTGCAAC
TACTATCTGCCGTTATTTTGTCTGCGGCACGATTGGTGCAATAATATGTC
ATGTTGTTATTAGTTGTAATAGGATATTTATCCATGTCTGCCGGATATTT
TGTAAGCTTTATACTAGTTGTGAACCGTGCTTTTGCAGCTATTAATTAAC
TAATGTTGTTTTGTTATTAAAAAAAAAAAAAAAAAAAAGCTTGGGGGGGG
CCGAGTTCCCATTACACCGATTTGGATGGGCGAGGCATTGATGAAGCGTG
TCATGCAGACCTGGCTTCCTGCAAGTAGTGCACTTTTGGAAATGATGATC
TTTCACCTTCCCTCTCCTTCCACGGCCCAAAAATATCGTGTTGAGAACTT
GTATGAGGGTCCTCTTGATGATCAATATGCTAATGCTATTCGGAACTGTG
ATCCTAATGGTCCTCTTATGCTCTATGTATCTAAGATGATTCCTGCATCT
GATAAGGGTAGGTTCTTTGCTTTCGGTCGTGTGTTTTCTGGTAGGT
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