CX292275

Overview
NameCX292275
Unique NameCX292275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig543 contig Ccv1_Contig543:13..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: PH1_ARATH (Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.323e-57
Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = 2
Query:   29 MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT--RASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSKR 457
            M S+WR  +GQ     DY+  EFWSNPERSGWLTKQG+YIKTWRRRWFVLK+GKL WFK+      R S PRGVI V  CLTVKGAEDV+NK +AFELS+ + TM+FIAD+EKEKE+WINSIGRSIVQHSRSVTDSE++DYD +R
Sbjct:    1 MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDYDHRR 145          
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: Y4775_DICDI (PH domain-containing protein DDB_G0274775 OS=Dictyostelium discoideum GN=DDB_G0274775 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  110 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV-LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 400
            +R GWLTKQG  I+TWRRRWFVLK  KLF+FK      A+   G+I +     VK  +D    K+Y F + T     Y  A++E + + W+ SI R++
Sbjct:   17 DREGWLTKQGGSIRTWRRRWFVLKGKKLFYFKSKGDIEAT---GLIELEQNSFVKEEKDKDKKKKYMFTVGTSKRVFYIFAETETDMKQWMESIKRNL 111          
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: CYH3_MOUSE (Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = 2
Query:    2 IRHEGDLTQ--MGSLWRAISGQTNQLSDYDS---TEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            I   GDL +  + +L+ +I  +  ++ + D    T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE           +Y I A S +EKE+W+ SI  SI
Sbjct:  225 INEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 379          
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: PKHH1_HUMAN (Pleckstrin homology domain-containing family H member 1 OS=Homo sapiens GN=PLEKHH1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  110 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE-STVTRASKPRGVIPVAS-CLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWI 379
            E+SG+L K G  +KTW+RRWFVL+QG++ ++K  S V R  KP+G + + S C  V+G          F+L +  +T Y  ADS    E+WI
Sbjct:  580 EKSGYLLKMGSQVKTWKRRWFVLRQGQIMYYKSPSDVIR--KPQGQVDLNSRCQIVRG-----EGSQTFQLISEKKTYYLTADSPSLLEEWI 664          
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: CYH2_CERAE (Cytohesin-2 OS=Cercopithecus aethiops GN=CYTH2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 49/160 (30.63%), Postives = 85/160 (53.12%), Query Frame = 2
Query:    2 IRHEGDLTQ--MGSLWRAISGQTNQLSDYDS---TEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTET----------MYFI-ADSEKEKEDWINSIGRSI 400
            I   GDL +  + +L+ +I  +  ++ + D    T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  +D   K   FEL           + +TE           +Y I A +++EK++WI SI  ++
Sbjct:  220 INEGGDLPEELLRNLYDSIRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVDDP-RKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQAAV 374          
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: CYH3_RAT (Cytohesin-3 OS=Rattus norvegicus GN=Cyth3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 IRHEGDLTQ--MGSLWRAISGQTNQLSDYDS---TEFWSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            I   GDL +  + +L+ +I  +  ++ + D    T  + NP+R GWL K G   +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE           +Y I A S +EKE+W+ SI  SI
Sbjct:  225 INEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 380          
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: CYH3_HUMAN (Cytohesin-3 OS=Homo sapiens GN=CYTH3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 IRHEGDLTQ--MGSLWRAISGQTNQLSDYDS---TEFWSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            I   GDL +  + +L+ +I  +  ++ + D    T  + NP+R GWL K G   +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE           +Y I A S +EKE+W+ SI  SI
Sbjct:  225 INEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 380          
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: CYH1_RAT (Cytohesin-1 OS=Rattus norvegicus GN=Cyth1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 IRHEGDLTQ--MGSLWRAISGQTNQLSDYDS---TEFWSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            I   GDL +  + +L+ +I  +  ++ + D    T  + NP+R GWL K G   +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE          T+Y I A + +EKEDWI  I  +I
Sbjct:  221 INDGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVED-SKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVYRISAPTPEEKEDWIKCIKAAI 376          
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: CYH1_MOUSE (Cytohesin-1 OS=Mus musculus GN=Cyth1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 IRHEGDLTQ--MGSLWRAISGQTNQLSDYDS---TEFWSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 400
            I   GDL +  + +L+ +I  +  ++ + D    T  + NP+R GWL K G   +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE          T+Y I A + +EKEDWI  I  +I
Sbjct:  221 INDGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVED-SKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVYRISAPTPEEKEDWIKCIKAAI 376          
BLAST of CX292275 vs. ExPASy Swiss-Prot
Match: PKHH2_MOUSE (Pleckstrin homology domain-containing family H member 2 OS=Mus musculus GN=Plekhh2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  110 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE-STVTRASKPRGVIPV-ASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWI 379
            E+SG+L K    +KTW+RRWFVLK G+L ++K  S V R  KP+G I + ASC  ++G     NKQ   +L+T   T Y  ADS    E+WI
Sbjct:  704 EKSGYLLKMSVRVKTWKRRWFVLKGGELLYYKSPSDVIR--KPQGHIELSASCSILRGD----NKQ-TVQLATEKHTYYLTADSPNILEEWI 788          
The following BLAST results are available for this feature:
BLAST of CX292275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PH1_ARATH5.323e-5771.03Pleckstrin homology domain-containing protein 1 OS... [more]
Y4775_DICDI9.505e-1441.84PH domain-containing protein DDB_G0274775 OS=Dicty... [more]
CYH3_MOUSE3.058e-1233.13Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1[more]
PKHH1_HUMAN4.415e-1141.30Pleckstrin homology domain-containing family H mem... [more]
CYH2_CERAE4.415e-1130.63Cytohesin-2 OS=Cercopithecus aethiops GN=CYTH2 PE=... [more]
CYH3_RAT7.531e-1132.92Cytohesin-3 OS=Rattus norvegicus GN=Cyth3 PE=2 SV=... [more]
CYH3_HUMAN7.531e-1132.92Cytohesin-3 OS=Homo sapiens GN=CYTH3 PE=2 SV=2[more]
CYH1_RAT7.531e-1132.92Cytohesin-1 OS=Rattus norvegicus GN=Cyth1 PE=1 SV=... [more]
CYH1_MOUSE7.531e-1132.92Cytohesin-1 OS=Mus musculus GN=Cyth1 PE=1 SV=1[more]
PKHH2_MOUSE9.836e-1145.65Pleckstrin homology domain-containing family H mem... [more]
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Properties
Property NameValue
Genbank descriptionC04013E03SK FlavFr1 Citrus clementina cDNA clone C04013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292275 ID=CX292275; Name=CX292275; organism=Citrus clementina; type=EST; length=662bp
AATTCGGCACGAGGGTGATTTGACACAAATGGGTAGCCTCTGGCGAGCCA
TATCGGGCCAAACGAACCAGCTCAGCGACTACGACAGCACTGAGTTCTGG
TCAAACCCCGAACGGTCCGGCTGGTTGACCAAACAAGGCGAGTACATAAA
AACTTGGCGTCGCCGATGGTTCGTTTTAAAACAAGGCAAGCTCTTTTGGT
TCAAAGAATCTACCGTCACCCGCGCCTCCAAGCCACGTGGCGTGATTCCA
GTGGCTTCCTGCCTCACCGTCAAGGGAGCCGAAGATGTGTTGAATAAACA
GTACGCTTTTGAGCTGAGTACGAGGACTGAGACGATGTACTTCATCGCTG
ATTCCGAGAAGGAGAAAGAGGACTGGATCAACTCCATCGGACGCTCCATA
GTGCAGCACTCCAGGTCGGTTACTGATTCCGAGATCGTCGATTACGATAG
CAAGCGGTGATGACGATTGATGATAAACTACAGGTTCGAATCATTTGTGC
CACGTGGCAACGTGTGGTGAATAATTCCTTTTTTGCTTTGTATATTGTGA
TGCTTAAATTAGTGTGTATTAGTTTGTTAGGGCTTTCGCGGTGTATGTTC
TGATGCTTACTTTGCCACATGAAAATGCTTATAAATTGAAATCAATTTTT
GGTTTTTGTTAA
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