CX292276

Overview
NameCX292276
Unique NameCX292276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292276 vs. ExPASy Swiss-Prot
Match: PH1_ARATH (Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:  349 ADSXKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSKR 459
            AD+ KEKE+WINSIGRSIVQHSRSVTDSE++DYD +R
Sbjct:  109 ADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDYDHRR 145
The following BLAST results are available for this feature:
BLAST of CX292276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PH1_ARATH7.351e-1181.08Pleckstrin homology domain-containing protein 1 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionC04013E04SK FlavFr1 Citrus clementina cDNA clone C04013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292276 ID=CX292276; Name=CX292276; organism=Citrus clementina; type=EST; length=648bp
AATTCGGCACGGAGGCGCCGGCAAGCAGCTCGAGGATGGCCGAACTCTCG
CCGATTACAACATTCAAAAGGAGTCCACTCTCCACCTTGTCCTCCGTCTC
CGTGGTGGTGACTTCTAAAAAAATAAATGTGGATGTGTCCGCGTTTGATT
GGATGGCGCTAATAATAATTAATTAGGTTGGATTGGGCGCTTTGCTTTAA
TTATTTTGTAATTACAATTGTGTAATGGCCAGCCGCTTGGGCCTAATTTC
CTCTTTCTATTGGTAATAATAATATAAGCACTAGTTTTTAAAAAAAAAAA
AAAAAAACTTTTGGGGGGGGGCCCGGGCCCCAATTTCCCCTTTTGTGGGC
TGATTCCNAGAAGGAGAAAGAGGACTGGATCAACTCCATCGGACGCTCCA
TAGTGCAGCACTCCAGGTCGGTTACTGATTCCGAGATCGTCGATTACGAT
AGCAAGCGGTGATGACGATTGATGATAAACTACAGGTTCGAATCATTTGT
GCCACGTGGCAACGTGTGGTGAATAATTCCTTTTTTGCTTTGTATATTGT
GATGCTTAAATTAGTGTGTATTAGTTTGTTAGGGCTTTCGCGGTGTATGT
TCTGATGCTTACTTTGCCACATGAAAATGCTTATAAATTGAAATCAAT
back to top