CX292280

Overview
NameCX292280
Unique NameCX292280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig409 contig Ccv1_Contig409:1..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.183e-75
Identity = 144/219 (65.75%), Postives = 163/219 (74.43%), Query Frame = 3
Query:    3 LQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNT-TTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDNNTSSIFNT 656
            +Q A  +D RIG SLIRLHFHDCFV+GCD S+LLDN  TTIVSEK A PN NS RGF+VVD++K AVE ACPGVVSC DIL +A+E SV+L+GGPSW  LLGRRD RTAN+  AN +LP P  +L  L  +F NVGLN N DLVALSGAHTFGRAQCRTFS RLFNF++TGNPDP             CPQGG+G  +TNLD TTPD FDNN  S   T
Sbjct:   45 VQQALQNDARIGGSLIRLHFHDCFVDGCDGSLLLDNNGTTIVSEKDALPNTNSTRGFDVVDNIKTAVENACPGVVSCVDILALASESSVSLAGGPSWNVLLGRRDRRTANQGGANTSLPSPFENLTNLTQKFTNVGLNVN-DLVALSGAHTFGRAQCRTFSPRLFNFSNTGNPDPTLNTTYLATLQQICPQGGSGFTVTNLDPTTPDTFDNNYFSNLQT 262          
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.208e-73
Identity = 136/211 (64.45%), Postives = 160/211 (75.83%), Query Frame = 3
Query:    3 LQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDNN 635
            +Q A  SD RIGASLIRLHFHDCFVNGCDASILLD+T +I SEK A PN NSARGF VVD++K A+E ACPGVVSC+D+L +A+E SV+L+GGPSWT LLGRRDS TAN   AN ++P P  SL  +  +F  VGLN N DLVALSGAHTFGRA+C  F++RLFNF+ TGNPDP             CPQ G+ S +TNLD++TPD FDNN
Sbjct:   52 IQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTN-DLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNN 261          
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.146e-70
Identity = 132/211 (62.56%), Postives = 156/211 (73.93%), Query Frame = 3
Query:    3 LQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDNN 635
            +Q AF SD RIGASLIRLHFHDCFV+GCDASILLD++ +I SEK A PN NSARGF VVD++K A+E  CPGVVSC+DIL +A+E SV+L+GGPSWT LLGRRDS TAN   AN  +P P   L  +  +F  VGLN N DLVALSGAHTFGRA+C  F++RLFNF+ T  PDP             CPQ G+ S +TNLD++TPD FDNN
Sbjct:   22 IQQAFQSDTRIGASLIRLHFHDCFVDGCDASILLDDSGSIQSEKNAGPNANSARGFNVVDNIKTALENTCPGVVSCSDILALASEASVSLTGGPSWTVLLGRRDSLTANLAGANSAIPSPFEGLSNITSKFSAVGLNTN-DLVALSGAHTFGRARCGVFNNRLFNFSGTNGPDPTLNSTLLSSLQQLCPQNGSASTITNLDLSTPDAFDNN 231          
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.401e-68
Identity = 127/211 (60.19%), Postives = 153/211 (72.51%), Query Frame = 3
Query:    3 LQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDNN 635
            +Q A  SD RIG SLIRLHFHDCFVNGCD S+LLD+T++I SEK A  N NS RGF VVD +K A+E ACPG+VSC+DIL +A+E SV+L+GGPSWT LLGRRD  TAN + AN +LP P   L  +  +F  VGL    D+V+LSGAHTFGR QC TF++RLFNFN TGNPDP             CPQ G+ + +TNLD++TPD FDNN
Sbjct:   53 IQQALQSDARIGGSLIRLHFHDCFVNGCDGSLLLDDTSSIQSEKNAPANANSTRGFNVVDSIKTALENACPGIVSCSDILALASEASVSLAGGPSWTVLLGRRDGLTANLSGANSSLPSPFEGLNNITSKFVAVGLKTT-DVVSLSGAHTFGRGQCVTFNNRLFNFNGTGNPDPTLNSTLLSSLQQLCPQNGSNTGITNLDLSTPDAFDNN 262          
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.076e-68
Identity = 125/208 (60.10%), Postives = 155/208 (74.52%), Query Frame = 3
Query:    9 NAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDN 632
            NA  SD RI AS++RLHFHDCFVNGCDASILLDNTT+  +EK A  N NSARGF+V+D MKAA+E+ACP  VSCAD+L IAA++S+ L+GGPSW    GRRDS      LAN+NLPGP+++L++LKDRF+NVGL+ + DLVALSG HTFG++QC+   DRL+NF  TG PDP             CP+ GN SVL + D+ TP +FDN
Sbjct:   46 NALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFDVIDKMKAAIEKACPRTVSCADMLAIAAKESIVLAGGPSWMVPNGRRDSLRGFMDLANDNLPGPSSTLKQLKDRFKNVGLDRSSDLVALSGGHTFGKSQCQFIMDRLYNFGETGLPDPTLDKSYLATLRKQCPRNGNQSVLVDFDLRTPTLFDN 253          
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 7.687e-67
Identity = 130/208 (62.50%), Postives = 148/208 (71.15%), Query Frame = 3
Query:    9 NAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDN 632
            N   SD RI AS++RLHFHDCFVNGCDASILLDNTT+  +EK A  N NSARGF V+D MKAAVE ACP  VSCAD+LTIAA+QSV L+GGPSW   LGRRDS  A   LAN NLP P  +L +LKD FRNVGLN + DLVALSG HTFG+ QCR   DRL+NF++TG PDP             CP  GN S L + D+ TP +FDN
Sbjct:   54 NELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDN 261          
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.004e-66
Identity = 131/208 (62.98%), Postives = 148/208 (71.15%), Query Frame = 3
Query:    9 NAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDN 632
            N   SD  I AS++RLHFHDCFVNGCDASILLDNTT+  +EK A  N NSARGF VVD +KAAVERACP  VSCAD+LTIAA+QSV L+GGPSW   LGRRDSR A   LAN NLP P+ +L  LK  F NVGLN   DLVALSG HTFG+ QCR   DRL+NF++TG PDP             CP+ GN SVL + D+ TP VFDN
Sbjct:   33 NELRSDPSIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVVDRIKAAVERACPRTVSCADVLTIAAQQSVNLAGGPSWRVPLGRRDSRQAFLDLANANLPAPSFTLPELKAAFANVGLNRPSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRQQCPRNGNQSVLVDFDLRTPTVFDN 240          
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.311e-66
Identity = 124/210 (59.05%), Postives = 154/210 (73.33%), Query Frame = 3
Query:    3 LQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDN 632
            ++ A  SD RI AS++RLHFHDCFVNGCDASILLDNTT+  +EK A  N  SARGF+V+D MKAAVE+ACP  VSCAD+L IAA++SV L+GGPSW    GRRDS      LAN+NLPGP+++L+ LKD+FRNVGL+   DLVALSG HTFG+ QC+   DRL+NF+++G PDP             CP+ GN SVL + D+ TP +FDN
Sbjct:   46 IKTALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNARSARGFDVIDTMKAAVEKACPKTVSCADLLAIAAQKSVVLAGGPSWKVPSGRRDSLRGFMDLANDNLPGPSSTLQVLKDKFRNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNSGKPDPTLDKSYLSTLRKQCPRNGNLSVLVDFDLRTPTIFDN 255          
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PER37_ARATH (Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.237e-66
Identity = 126/208 (60.58%), Postives = 151/208 (72.60%), Query Frame = 3
Query:    9 NAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDN 632
            NA  SD RI AS++RLHFHDCFVNGCDASILLDNTT+  +EK A  N NSARGF+V+D MKAAVE+ACP  VSCAD+L IAA++SV L+GGPSW    GRRDS      LAN+NLP P  +L +LKDRF+NVGL+   DLVALSG HTFG+ QC+   DRL+NF++TG PDP             CP+ GN SVL + D+ TP +FDN
Sbjct:   46 NALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFDVIDKMKAAVEKACPKTVSCADLLAIAAQESVVLAGGPSWRVPNGRRDSLRGFMDLANDNLPAPFFTLNQLKDRFKNVGLDRASDLVALSGGHTFGKNQCQFIMDRLYNFSNTGLPDPTLDKSYLSTLRKQCPRNGNQSVLVDFDLRTPTLFDN 253          
BLAST of CX292280 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.921e-66
Identity = 130/208 (62.50%), Postives = 149/208 (71.63%), Query Frame = 3
Query:    9 NAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPDVFDN 632
            N   SD RI  S++RLHFHDCFVNGCDASILLDNTT+  +EK A  N NSARGF V+D MKAAVERACP  VSCAD+LTIAA+QSV L+GGPSW   LGRRDS  A   LAN NLP P  +L +LK  F+NVGL+   DLVALSGAHTFG+ QCR   DRL+NF++TG PDP             CP+ GN SVL + D+ TP VFDN
Sbjct:   55 NELRSDPRIAGSILRLHFHDCFVNGCDASILLDNTTSFRTEKDALGNANSARGFPVIDRMKAAVERACPRTVSCADMLTIAAQQSVTLAGGPSWKVPLGRRDSLQAFLDLANANLPAPFFTLPQLKANFKNVGLDRPSDLVALSGAHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGQCPRNGNQSVLVDFDLRTPLVFDN 262          
The following BLAST results are available for this feature:
BLAST of CX292280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER15_IPOBA1.183e-7565.75Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PER53_ARATH4.208e-7364.45Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PERA2_ARMRU1.146e-7062.56Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER54_ARATH1.401e-6860.19Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PER38_ARATH4.076e-6860.10Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER1A_ARMRU7.687e-6762.50Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER1C_ARMRU1.004e-6662.98Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER2_ARMRU1.311e-6659.05Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]
PER37_ARATH2.237e-6660.58Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=... [more]
PER33_ARATH2.921e-6662.50Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC04013E08SK FlavFr1 Citrus clementina cDNA clone C04013E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292280 ID=CX292280; Name=CX292280; organism=Citrus clementina; type=EST; length=676bp
TGCTTCAGAATGCTTTCTTGTCCGATATTCGCATCGGTGCCAGCCTCATC
AGGCTTCATTTCCATGACTGTTTTGTTAATGGCTGTGATGCATCGATTTT
GCTGGACAATACTACTACCATAGTAAGCGAGAAATTTGCTGCGCCAAATA
ATAATTCGGCGAGGGGTTTTGAAGTTGTTGATGACATGAAAGCTGCCGTT
GAAAGGGCCTGTCCAGGCGTTGTTTCCTGTGCTGATATTCTTACTATTGC
AGCTGAACAATCTGTTGCTCTGTCAGGGGGTCCTTCATGGACAAATCTAT
TGGGAAGGAGAGACAGCAGAACAGCCAACAGGACTCTTGCAAATGAAAAT
CTTCCAGGACCGAACAATAGTCTTGAGAGGCTCAAAGATAGATTCAGAAA
TGTTGGCCTCAACGATAATTTTGATCTTGTTGCACTCTCCGGAGCTCACA
CATTTGGAAGGGCTCAGTGCCGAACTTTTAGCGATAGGTTATTCAATTTC
AACAGCACTGGCAATCCAGACCCAACACTTAACACAACCCTCTTACAACA
ACTAAGGCAACTATGCCCACAAGGTGGAAACGGCAGCGTTCTAACTAATC
TTGATGTCACAACACCTGATGTGTTTGACAACAATACTTCTTCAATCTTC
AATACACAAGGGCCTTCTGCAGAGTG
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