CX292284

Overview
NameCX292284
Unique NameCX292284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.848e-32
Identity = 66/82 (80.49%), Postives = 73/82 (89.02%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIP 419
            S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG   P
Sbjct:   40 SDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGFGSP 121          
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.120e-31
Identity = 63/79 (79.75%), Postives = 73/79 (92.41%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 410
            S +P  +  +YLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG +MS++YE+KKDEDGFLY+TYSGENTFG+
Sbjct:   41 SEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFGA 119          
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.462e-31
Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 410
            S +P  +  +YLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLPPTGA+MS IY+E K+EDGFLYVTYSGENTFGS
Sbjct:   40 SDIPNIDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFGS 118          
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.479e-31
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 407
            S +P+ +  +YLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   40 SDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 9.479e-31
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 407
            S +P+ +  +YLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   40 SDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.112e-30
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 410
            S +P+ +  +YLVPADLTVGQFVYV+RKRIKL AEKAIF+FV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFGS
Sbjct:   40 SDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118          
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8_YARLI (Autophagy-related protein 8 OS=Yarrowia lipolytica GN=ATG8 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.758e-30
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 407
            S +P  +  +YLVPADLTVGQFVYVIRKRIKLS+E+AIFIFVD+VLPPT A+MS+IYEE KDEDGFLYVTYSGENTFG
Sbjct:   39 SDIPVIDKKKYLVPADLTVGQFVYVIRKRIKLSSERAIFIFVDDVLPPTAALMSSIYEEHKDEDGFLYVTYSGENTFG 116          
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.602e-30
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 407
            S +P+ +  +YLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   40 SDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.602e-30
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 407
            S +P+ +  +YLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   40 SDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX292284 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.704e-30
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 3
Query:  174 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 407
            S +P+ +  +YLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+LPPT AIMSAIYEE KDEDGFLY++YSGENTFG
Sbjct:   40 SDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117          
The following BLAST results are available for this feature:
BLAST of CX292284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATG8F_ARATH3.848e-3280.49Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8E_ARATH1.120e-3179.75Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8G_ARATH1.462e-3182.28Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
ATG8C_ORYSJ9.479e-3180.77Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI9.479e-3180.77Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8A_ARATH2.112e-3078.48Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8_YARLI2.758e-3080.77Autophagy-related protein 8 OS=Yarrowia lipolytica... [more]
ATG8B_ORYSJ3.602e-3079.49Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI3.602e-3079.49Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8D_ARATH4.704e-3079.49Autophagy-related protein 8d OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC04013E12SK FlavFr1 Citrus clementina cDNA clone C04013E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292284 ID=CX292284; Name=CX292284; organism=Citrus clementina; type=EST; length=606bp
ATCATATCTATTACTTCTTTTTCTTTGTCGCATTTCTTTGAAAGATCATT
GTATTTGTAGAATTGGCTGTCGCTTCAGTGTTTATAGTTGCTATCATTGC
TGACAGATGGTAATTTAAATGTCCATATGGACTATAACAACTCGCTACTT
GATTCTATCATACTAATAAGGTTTCCTCTTTACCTGAATGTGAAAATTAC
AGGTATCTTGTTCCAGCTGACCTGACTGTAGGACAATTTGTCTATGTCAT
CCGTAAAAGGATCAAACTGAGTGCTGAAAAGGCGATATTTATTTTTGTGG
ATAATGTGCTCCCACCTACAGGTGCAATTATGTCTGCCATATACGAAGAG
AAAAAGGATGAAGATGGTTTTCTTTATGTGACTTACAGTGGGGAGAACAC
ATTTGGAAGCCACATCCCAGTTTAGCCTTGTGATTATCTATCTGCTCATT
GTGTGGTTTCTTGTGCGACCACATTTTTATCTCAATTATCATCCTTGCTT
TCCGCTGAATATTCCTTTATCGGGCATATTTTATATTTTATAAAGACATT
GCCAGTGATAATATGTACAGTTACCTATTGTATATAAGTCTTAAAGGCAT
AATATG
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