CX292288

Overview
NameCX292288
Unique NameCX292288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292288 vs. ExPASy Swiss-Prot
Match: PP208_ARATH (Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.554e-65
Identity = 121/233 (51.93%), Postives = 170/233 (72.96%), Query Frame = 3
Query:    6 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA--CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 698
            +++E+RS GYEMEMET V+V  RF +  M+KEAV+L+EFAMA    N P+ +CC+ LL+KIV +K+LDM LF++ ++ +  NGNV+ D ML  VLK+L SV R G+ N++LKAM EGG++ S +++S IA  LS  GKKDEANE ++ MEASG+ + DK   SL++GHC A DL++A++CF+KM+ KEG S+AGYA + LV  YC+  +A D  K     V++  LKPWH+TY
Sbjct:  303 MIEEIRSAGYEMEMETYVRVSARFCQTKMIKEAVELFEFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQHVLKSLRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASGNHLDDKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDVYKLFSELVKQNQLKPWHSTY 535          
BLAST of CX292288 vs. ExPASy Swiss-Prot
Match: PP387_ARATH (Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidopsis thaliana GN=At5g15980 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 117/234 (50.00%), Postives = 167/234 (71.37%), Query Frame = 3
Query:    6 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA---CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 698
            ++ EMRS GYE+E+ET V+V  RF +  ++KEAVDL+E AMA     N P+ +C   LL+KIV +K LDM LFS+ V+V+ +NGN LTD++L SVLK+L SV R+ + N++LK M+ GG++ S +M+S IA  LS  GKKDEA+EF+D ME+SG+++ DK   SL++G+C +G+LD+A  CF+KMV   G S+A Y+ + LV  YC+KN+  DA K +   V +  LKP H+TY
Sbjct:  309 IVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLLKSVLKSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMESSGNNLDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVRDAYKLLSAQVTKNQLKPRHSTY 542          
BLAST of CX292288 vs. ExPASy Swiss-Prot
Match: PP269_ARATH (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 83/231 (35.93%), Postives = 129/231 (55.84%), Query Frame = 3
Query:    6 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 698
            V+DEM++ GY+M+++T +KV  +F +  M+ E V LYE+ M    KPS+  C+ LLR +  S   D+ L  +V R +   G  L+ A+ + + ++L SVGR  E  +I KAM   G+   +   S++ F L  A + +EA   +D MEA G     K W  LI+GHC   +LDKA  CF  M+EK G       +D+L++ +   N+   A  F+   V+  ++KPW +TY
Sbjct:  285 VVDEMKTAGYDMDLDTYIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEK-GFDIDSNLLDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTY 514          
The following BLAST results are available for this feature:
BLAST of CX292288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PP208_ARATH1.554e-6551.93Pentatricopeptide repeat-containing protein At3g02... [more]
PP387_ARATH1.664e-5950.00Pentatricopeptide repeat-containing protein At5g15... [more]
PP269_ARATH3.377e-3635.93Pentatricopeptide repeat-containing protein At3g48... [more]
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Properties
Property NameValue
Genbank descriptionC04013F04SK FlavFr1 Citrus clementina cDNA clone C04013F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292288 ID=CX292288; Name=CX292288; organism=Citrus clementina; type=EST; length=698bp
GGAAGGTTCTTGATGAGATGAGGAGTAAAGGATATGAAATGGAGATGGAG
ACTTGTGTCAAGGTTTTAGGGAGGTTTTCTGAGAGGAATATGGTTAAGGA
AGCTGTGGACTTGTATGAATTTGCAATGGCTTGTAAAAATAAGCCCTCTG
TGAATTGTTGCACATTTTTATTACGCAAAATAGTGGTCAGTAAGCAGCTA
GATATGAGACTTTTTTCAAAGGTTGTGAGGGTCTTCAGAGAAAATGGCAA
TGTGTTGACCGATGCTATGCTCAATTCAGTTTTAAAGGCTTTGATTAGTG
TTGGTAGGATGGGAGAATGCAATAAGATTTTGAAAGCTATGGAAGAAGGT
GGGTTTATAGCTAGTAGTAACATGAAGAGCAAAATTGCATTCAGGCTTAG
TAGTGCTGGTAAAAAAGATGAAGCAAATGAGTTTATGGATCATATGGAAG
CATCAGGTAGTGATGTAGGTGACAAGATGTGGGTTTCTTTAATTAAAGGA
CATTGTGTGGCTGGGGATCTTGACAAGGCTGCTGATTGTTTCCAAAAGAT
GGTTGAAAAAGAGGGCACCTCTCATGCTGGTTATGCGATTGATTTGTTGG
TAAACACTTATTGCAGTAAGAACAGAGCAATAGATGCTTGCAAGTTTGTC
CATAACTGTGTGCGTGAATATGATTTGAAACCTTGGCATACTACATAT
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