CX292293

Overview
NameCX292293
Unique NameCX292293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12151 contig Ccv1_Contig12151:523..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292293 vs. ExPASy Swiss-Prot
Match: VSR1_ARATH (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 8.080e-29
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 2
Query:    2 ACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLKTSPFPQPL-*QIFGCSIKS 277
            ACK + + D+SFKS+PG LPTF+L+DRGDCYFTLKAW AQ+ GAAAILVAD K EPLITMDTPEE+ +DA+YL+    P  L  +  G SIKS
Sbjct:   69 ACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKS 161          
BLAST of CX292293 vs. ExPASy Swiss-Prot
Match: VSR2_ARATH (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.087e-27
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 2
Query:    2 ACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLKTSPFPQPL 247
            ACK FD+ ++SF+SR  GLPTF+LVDRGDCYFTLKAWNAQ+ GAA ILVAD++ E LITMD PE+E +DA+YL+    P  L
Sbjct:   73 ACKNFDDFEISFRSRVAGLPTFVLVDRGDCYFTLKAWNAQRAGAATILVADNRPEQLITMDAPEDETSDADYLQNITIPSAL 154          

HSP 2 Score: 22.7126 bits (47), Expect = 4.087e-27
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  220 QNITIPSALIA 252
            QNITIPSAL++
Sbjct:  146 QNITIPSALVS 156          
BLAST of CX292293 vs. ExPASy Swiss-Prot
Match: VSR4_ARATH (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.433e-25
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 ACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLKTSPFPQPL 247
            +CK F +  +SFKS+PG LPTFLLVDRGDC+F LK WNAQK GA+A+LVAD+  EPLITMDTPEE+ + A+Y++    P  L
Sbjct:   74 SCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSAL 155          
BLAST of CX292293 vs. ExPASy Swiss-Prot
Match: VSR3_ARATH (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.433e-25
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 ACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLKTSPFPQPL 247
            +CK F +  +SFKS+PG LPTFLLVDRGDC+F LK WNAQK GA+A+LVAD+  EPLITMDTPEE+ + A+Y++    P  L
Sbjct:   74 SCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSAL 155          
BLAST of CX292293 vs. ExPASy Swiss-Prot
Match: VSR1_PEA (Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.743e-23
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query:    8 KGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLKTSPFPQPL 247
            KG  + D SFKSRPG LPT LL+DRG C+F LK WNAQK GA+A+LVADD  EPLITMDTPEE+ + A+Y++    P  L
Sbjct:   71 KGCKDFDSSFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDVSSAKYIENITIPSAL 150          
BLAST of CX292293 vs. ExPASy Swiss-Prot
Match: VSR6_ARATH (Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 2
Query:   11 GFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLKTSPFPQPL 247
            G D  D +FK +    PT L++DRG+CYF LK WN Q+ G AA+LVAD+  EPLITMD+PEE     ++++    P  L
Sbjct:   75 GCDSFDKTFKPK-FPRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPLITMDSPEESKEADDFIEKLNIPSAL 152          
BLAST of CX292293 vs. ExPASy Swiss-Prot
Match: VSR7_ARATH (Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.621e-14
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 2
Query:   59 PTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLKTSPFPQPL 247
            PT LL+DRG CYF LKAW+AQ+ GAAA+LVAD+  EPL+TMD+PEE      +++    P  L
Sbjct:   91 PTILLLDRGGCYFALKAWHAQQAGAAAVLVADNVDEPLLTMDSPEESKDADGFIEKLTIPSVL 153          
BLAST of CX292293 vs. ExPASy Swiss-Prot
Match: VSR5_ARATH (Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 2
Query:   59 PTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLKTSPFPQPL-*QIFGCSIK 274
            P  LL+DRG C F LK WN Q+ GAAA+L+AD+  EPLITMDTP++E  D +++     P  L  + FG S+K
Sbjct:   91 PKILLIDRGVCNFALKIWNGQQSGAAAVLLADNIVEPLITMDTPQDE--DPDFIDKVKIPSALILRSFGDSLK 161          
The following BLAST results are available for this feature:
BLAST of CX292293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VSR1_ARATH8.080e-2965.59Vacuolar-sorting receptor 1 OS=Arabidopsis thalian... [more]
VSR2_ARATH4.087e-2765.85Vacuolar-sorting receptor 2 OS=Arabidopsis thalian... [more]
VSR4_ARATH2.433e-2562.20Vacuolar-sorting receptor 4 OS=Arabidopsis thalian... [more]
VSR3_ARATH2.433e-2562.20Vacuolar-sorting receptor 3 OS=Arabidopsis thalian... [more]
VSR1_PEA1.743e-2362.50Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP... [more]
VSR6_ARATH3.893e-1548.10Vacuolar-sorting receptor 6 OS=Arabidopsis thalian... [more]
VSR7_ARATH5.621e-1455.56Vacuolar-sorting receptor 7 OS=Arabidopsis thalian... [more]
VSR5_ARATH1.808e-1250.68Vacuolar-sorting receptor 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC04013F09SK FlavFr1 Citrus clementina cDNA clone C04013F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292293 ID=CX292293; Name=CX292293; organism=Citrus clementina; type=EST; length=293bp
GGCTTGTAAGGGTTTTGATGAAGTTGATCTTTCCTTCAAGTCAAGGCCTG
GAGGATTACCCACTTTTCTCCTTGTTGATCGAGGAGATTGTTACTTCACC
TTGAAGGCCTGGAATGCGCAAAAAGGTGGAGCTGCTGCTATTCTTGTGGC
AGATGATAAGACTGAACCTTTGATTACCATGGACACCCCTGAAGAAGAGA
ATGCAGACGCTGAATATCTCAAAACATCACCATTCCCTCAGCCCTTATAG
CAAATCTTTGGGTGCAGTATCAAGAGTCTCTAGTGGTGGGGAA
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