CX292317

Overview
NameCX292317
Unique NameCX292317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292317 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3
Query:   15 HYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 155
            HYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  295 HYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CX292317 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.529e-13
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 3
Query:   15 HYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 131
            HYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  406 HYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CX292317 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 25/46 (54.35%), Postives = 38/46 (82.61%), Query Frame = 3
Query:   15 HYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 152
            +YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  414 NYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
The following BLAST results are available for this feature:
BLAST of CX292317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CYSPL_SOLLC4.752e-1572.34Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYA_ORYSJ1.529e-1376.92Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.294e-1254.35Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC04013H11SK FlavFr1 Citrus clementina cDNA clone C04013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292317 ID=CX292317; Name=CX292317; organism=Citrus clementina; type=EST; length=452bp
GAATTGGCACGAGGCACTATAGCTGCTGCCCACATGACTATCCCATCTGT
AATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACAACCCATTGGGAGT
GAGGGCATTACGACGCACCCCTGCTAAACCTTACTGGGCTCATGGAAATC
AAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGCACTGTAAGAGCAGTGG
AAGGCCGAAGGGAGGATGAAAATATTCGTGCTTGTGAATGAGTTTCTCCC
CGGCCTTAGTTCATTCTACTGCATTTCATTCCAAACGTTAATGTACCGGC
AGGTGGATGGTCTGTTAAATATTTATTCGGACGTTGGTTTGGTATATAGC
GTTGTAAGTTATCTATCTGCGTTGAATCTGAACAATGCACAAACAAATTG
TTGTTATCTAAAAAAAAAAAAAAAAAAACTCGGGGGGGGGCCCGGTCCCC
AA
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