CX292379

Overview
NameCX292379
Unique NameCX292379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length366
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX292379 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.705e-39
Identity = 81/120 (67.50%), Postives = 85/120 (70.83%), Query Frame = 2 
Query:    5 EPAKXXXXXXXXXXXXFKQTMRQGGPAKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEDVGDPXXXXXXXXXXXXXXXGFSFWSRRDSNAFIRACEK 364
            +P K            FKQT+RQG PAKPKEPRIPRMPQLHDFQFFN QRL+ELYEKEVRYLMQTHQKNQLKDTIDVEEPE  GDP               GFS WSRRD N F+RACEK
Sbjct:  742 DPPKRERKRNYSESEYFKQTLRQGAPAKPKEPRIPRMPQLHDFQFFNIQRLTELYEKEVRYLMQTHQKNQLKDTIDVEEPEG-GDPLTTEEVEEKEGLLEEGFSTWSRRDFNTFLRACEK 860
[Close]
BLAST of CX292379 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.468e-30
Identity = 69/121 (57.02%), Postives = 78/121 (64.46%), Query Frame = 2 
Query:    2 IEPAKXXXXXXXXXXXXFKQTMRQGGPAKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEDVGDPXXXXXXXXXXXXXXXGFSFWSRRDSNAFIRACEK 364
            IEP +            FKQ +RQG PAKP+EPRIPRMP LHDFQFFN QRL+ELYEKEVRYLMQ +QK   KDTID E+ ED  +P               GF+ W+RRD N FIRACEK
Sbjct:  780 IEPPRRERKRNYSESEYFKQALRQGAPAKPREPRIPRMPHLHDFQFFNNQRLNELYEKEVRYLMQANQK---KDTIDGED-EDQLEPLTAEEQEEKEQLLEEGFATWTRRDFNTFIRACEK 896
The following BLAST results are available for this feature:
BLAST of CX292379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ISW2_ARATH1.705e-3967.50Putative chromatin-remodeling complex ATPase chain... [more]
ISW2_ORYSJ2.468e-3057.02Probable chromatin-remodeling complex ATPase chain... [more]
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Properties
Property NameValue
Genbank descriptionC04015A05SK FlavFr1 Citrus clementina cDNA clone C04015A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292379 ID=CX292379; Name=CX292379; organism=Citrus clementina; type=EST; length=366bp
GATTGAACCTGCAAAGAGAGAGCGGGAACGCAGTTACTCTGAATCTGAGT
ACTTTAAGCAAACAATGCGCCAAGGTGGTCCAGCAAAACCAAAAGAACCT
CGAATTCCTCGGATGCCTCAGCTGCATGATTTTCAGTTTTTCAACACTCA
AAGGCTAAGCGAGTTGTATGAAAAAGAAGTACGCTACTTGATGCAAACAC
ATCAGAAGAATCAGCTAAAAGACACCATTGATGTGGAAGAGCCCGAAGAC
GTGGGAGATCCACTGACTGCTGAAGAGTTGGAAGAAAAGGAGCGATTGTT
ACAAGAAGGATTTTCTTTTTGGAGTAGAAGAGATTCCAATGCTTTCATTA
GGGCTTGTGAGAAGTA
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