CX292382

Overview
NameCX292382
Unique NameCX292382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.287e-37
Identity = 75/126 (59.52%), Postives = 99/126 (78.57%), Query Frame = 1
Query:  178 MGALVSKF---WFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG+ +S F   W   F   +YK+IIVGL+ AGKTTTLYKL L EVV+T PTVGSN+EE VY+NIR   WD+GGQ+ LR++W  YY  T AVI+VIDSTDRAR++++K+ELF++L HE+L+ S++LI
Sbjct:    1 MGSSLSIFASIWNRFFNNAEYKVIIVGLNAAGKTTTLYKLLLDEVVSTTPTVGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILI 126          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 72/123 (58.54%), Postives = 94/123 (76.42%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG L ++ W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V  N RF  WD+GGQE LR+SW TYY  T  VIVV+DSTDR RIS+ ++EL+++L HEDL+ + +LI
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 122          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 72/123 (58.54%), Postives = 94/123 (76.42%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG L ++ W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V  N RF  WD+GGQE LR+SW TYY  T  VIVV+DSTDR RIS+ ++EL+++L HEDL+ + +LI
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 122          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 72/123 (58.54%), Postives = 94/123 (76.42%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG L ++ W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V  N RF  WD+GGQE LR+SW TYY  T  VIVV+DSTDR RIS+ ++EL+++L HEDL+ + +LI
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 122          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG + +K W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V KN  F  WD+GGQE LR+SW TYY  T  +I+V+DS DR R++I K+EL+R+L HEDL+ + VLI
Sbjct:    1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLI 122          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG + +K W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V KN  F  WD+GGQE LR+SW TYY  T  +I+V+DS DR R++I K+EL+R+L HEDL+ + VLI
Sbjct:    1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLI 122          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 72/123 (58.54%), Postives = 93/123 (75.61%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG L ++ W  LF  +++K+IIVGLDNAGKTT LY+  + EVV T PT+GSNVEE+V  N RF  WD+GGQE LR SW TYY  T  VIVV+DSTDR RIS+ ++EL+++L HEDL+ + +LI
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 122          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARL5_CAEEL (ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.063e-32
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG +++K +   + GK YKII+VGLDNAGKTT LY     + V T PT+GSNVEE+ Y+N+ F  WD+GGQE LR SW+TYY  T  VIVVIDS+D  RI IMK++L  +L HEDL  + +L+
Sbjct:    1 MGLIMAKLFQSWWIGKKYKIIVVGLDNAGKTTILYNYVTKDQVETKPTIGSNVEEVSYRNLDFVIWDIGGQESLRKSWSTYYVQTDVVIVVIDSSDTTRIPIMKEQLHNMLQHEDLARAHILV 123          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.038e-32
Identity = 66/123 (53.66%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG   SK +  LF  K+ +I++VGLD AGKTT LYKL LGEV+TT PT+G NVE + YKNI F  WDVGGQ+R+R+ W  YYR T  VI VIDS DR+RI   ++ + R+L  ++L+++V L+
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLV 123          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.175e-31
Identity = 64/123 (52.03%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG   SK +  LF  K+ +I++VGLD AGKTT LYKL LGEV+TT PT+G NVE + YKNI F  WDVGGQ+R+R+ W  YYR T  VI V+DS DR+RI   ++ + R+L  ++L+++  L+
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLV 123          
The following BLAST results are available for this feature:
BLAST of CX292382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
ARL5_DICDI9.287e-3759.52ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]
ARL5A_RAT4.609e-3658.54ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_HUMAN4.609e-3658.54ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARL5A_BOVIN4.609e-3658.54ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARL5B_MOUSE7.862e-3657.72ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN7.862e-3657.72ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARL5A_MOUSE7.862e-3658.54ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5_CAEEL1.063e-3255.28ADP-ribosylation factor-like protein 5 OS=Caenorha... [more]
ARF2_YEAST4.038e-3253.66ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF1_YEAST1.175e-3152.03ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC04015A11SK FlavFr1 Citrus clementina cDNA clone C04015A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292382 ID=CX292382; Name=CX292382; organism=Citrus clementina; type=EST; length=548bp
GCAATTCGCAAAATCCAGAGGTTTCAATCCCCTGCATCGCAAATCACTCC
CTTCATCATCAGCTCCCATCCATCCACCCCGCCCATTTCATCATCTCCCA
GTCTCTCCATCCAGATTCGATCTCAATTCACTCTCACGTCGATCCTTCAC
GGAATCGGGATTTAAAGAGGGAAAGGTATGGGAGCATTGGTATCGAAGTT
TTGGTTCATGTTGTTTCCTGGAAAGGATTATAAAATTATAATCGTGGGGT
TGGATAATGCTGGCAAAACGACGACGCTTTACAAGTTGCACTTGGGAGAG
GTGGTCACTACTCACCCTACTGTTGGCAGCAACGTTGAGGAGCTTGTTTA
CAAAAACATTCGATTCGAGGCCTGGGATGTTGGCGGACAAGAAAGGCTGC
GGACATCATGGGCAACTTATTATCGTGGAACCCATGCTGTTATTGTGGTT
ATAGACAGTACTGATAGAGCCAGGATTTCCATTATGAAGGACGAACTATT
CAGGCTTCTTGGGCATGAGGACCTACAACACTCTGTTGTACTTATATT
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