CX292384

Overview
NameCX292384
Unique NameCX292384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292384 vs. ExPASy Swiss-Prot
Match: RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.506e-27
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 2
Query:    2 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDALNEALAAEVQRLKLAAAEVNGEAQLSSRMAQQL 289
            SKERK RYI+ELE+KVQTLQTEATTLSAQ+T+ QRD+ GL++EN ELK RLQAMEQQAQL+DALN+AL  E++RLKLA  E+    +  S   Q +
Sbjct:  149 SKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSNETYSMGLQHV 244          
BLAST of CX292384 vs. ExPASy Swiss-Prot
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.522e-27
Identity = 59/82 (71.95%), Postives = 73/82 (89.02%), Query Frame = 2
Query:    2 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDALNEALAAEVQRLKLAAAEV 247
            SKERKMRYI+ELE+KVQTLQTEATTLSAQ+ +LQRD++GLT+EN+ELK RLQ MEQQ  L+DALN+ L +EVQRLK+A  ++
Sbjct:  198 SKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQM 279          
BLAST of CX292384 vs. ExPASy Swiss-Prot
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.063e-25
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    2 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDALNEALAAEVQRLKLAAAEV 247
            SKERK RYI ELE+KVQTLQTEATTLSAQ+T+LQRD+ GLT ENNELK RLQ MEQQ  L+D LNEAL  E+Q LK+   +V
Sbjct:  218 SKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQV 299          
The following BLAST results are available for this feature:
BLAST of CX292384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RF2B_ORYSJ2.506e-2765.63Transcription factor RF2b OS=Oryza sativa subsp. j... [more]
RF2A_ORYSJ9.522e-2771.95Transcription factor RF2a OS=Oryza sativa subsp. j... [more]
POF21_ARATH3.063e-2571.95Probable transcription factor PosF21 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC04015B01SK FlavFr1 Citrus clementina cDNA clone C04015B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292384 ID=CX292384; Name=CX292384; organism=Citrus clementina; type=EST; length=509bp
TTCCAAGGAGAGGAAGATGCGATACATTTCAGAATTGGAGCAAAAAGTTC
AAACTCTGCAGACCGAGGCTACCACATTGTCTGCCCAGGTGACAATACTA
CAAAGAGATTCTGCGGGGCTTACAAGTGAGAACAATGAGTTGAAATTCCG
ACTTCAGGCCATGGAGCAACAGGCTCAACTCAAAGATGCTTTGAACGAGG
CATTGGCTGCAGAAGTACAGAGACTGAAGCTCGCTGCTGCAGAGGTCAAT
GGAGAGGCCCAACTTTCAAGCCGCATGGCTCAGCAGCTTTCCATTAATCA
TCAGATGTTCCAGATGCAGCATCAGCAGCAGAACCAAGATGCAGGAGCAG
CCTCAGCGTGGCCAACTGCAACCTGGGCAGCAAAGTCATGAGGCTGCTAT
GCATGACTGGAAGTAATAGGCCGGCCATGTCGGCTAATAGTAGTATAGCA
GTATACGTAGGCTCAAAAGTATCGTTCAATAGTTATTTTATATATAAGTG
AACCTTGAC
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