CX292386

Overview
NameCX292386
Unique NameCX292386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL3_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.793e-28
Identity = 63/146 (43.15%), Postives = 88/146 (60.27%), Query Frame = 2
Query:   83 SKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            + +VYFMKQT+ NACGTIGL+HA+ N   ++ F+  S   KF + +A++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA
Sbjct:   81 TSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESASMSPEERARYLENYDAIRVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL3_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Mus musculus GN=Uchl3 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.342e-28
Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 2
Query:   83 SKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            + +VYFMKQT+ NACGTIGL+HA+ N   ++ F+  S   KF + + ++ P+ERA FLEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA
Sbjct:   81 TSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERAKFLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL3_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Homo sapiens GN=UCHL3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.217e-28
Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 2
Query:   83 SKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            + +VYFMKQT+ NACGTIGL+HA+ N   ++ F+  S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA
Sbjct:   81 TSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL3_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Sus scrofa GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.518e-27
Identity = 62/144 (43.06%), Postives = 87/144 (60.42%), Query Frame = 2
Query:   89 NVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            +VYFMKQT+ NACGTIGL+HA+ N  +++ F+  S   KF + +A++ P ERA +LE+   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA
Sbjct:   83 SVYFMKQTISNACGTIGLIHAIANNKNKMHFESGSTLKKFLEESASMSPDERARYLESYDAIPVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL3_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Rattus norvegicus GN=Uchl3 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.382e-27
Identity = 62/146 (42.47%), Postives = 85/146 (58.22%), Query Frame = 2
Query:   83 SKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            + +VYFMKQT+ NACGTIGL+HA+ N   ++ F+  S   KF + +  + P+ERA  LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA
Sbjct:   81 TSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSALKKFLEESVAMSPEERARHLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL4_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L4 OS=Mus musculus GN=Uchl4 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.416e-27
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 2
Query:   83 SKNVYFMKQTVGNACGTIG---LLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            + +VYFMKQT+ NACGTIG   L+HA+ N   ++ F+  S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            KV K  ++++P+ L FN IA
Sbjct:   81 TSSVYFMKQTISNACGTIGTIGLIHAIANNKDKVHFESGSTLKKFLEESVSMSPEERAKYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGWKPFPINHGKTSDETLLEDVIKVCKKFMERDPDELRFNAIA 229          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL1_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Sus scrofa GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.768e-27
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 2
Query:   77 ESSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A
Sbjct:   74 EVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVA 218          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL1_HORSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Equus caballus GN=UCHL1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.768e-27
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 2
Query:   77 ESSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A
Sbjct:   74 EVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDLLLQDAAKVCREFTEREQGEVRFSAVA 218          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL1_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Bos taurus GN=UCHL1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.768e-27
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 2
Query:   77 ESSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A
Sbjct:  103 EVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGTSSEDSLLQDAAKVCREFTEREQGEVRFSAVA 247          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL1_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Rattus norvegicus GN=Uchl1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 9.839e-27
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 2
Query:   77 ESSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A
Sbjct:   74 EVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVA 218          
The following BLAST results are available for this feature:
BLAST of CX292386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UCHL3_BOVIN1.793e-2843.15Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_MOUSE2.342e-2843.15Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_HUMAN5.217e-2842.47Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_PIG1.518e-2743.06Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_RAT3.382e-2742.47Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL4_MOUSE4.416e-2742.28Ubiquitin carboxyl-terminal hydrolase isozyme L4 O... [more]
UCHL1_PIG5.768e-2740.00Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_HORSE5.768e-2740.00Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_BOVIN5.768e-2740.00Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_RAT9.839e-2740.00Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]

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Properties
Property NameValue
Genbank descriptionC04015B04SK FlavFr1 Citrus clementina cDNA clone C04015B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292386 ID=CX292386; Name=CX292386; organism=Citrus clementina; type=EST; length=514bp
GCAGCCGGTGTTGTTGTTCACTTCTATTTGTGGAGCACAACTTCACTCCA
CTTTCCTCATTTTTTTCTCTCTGTAGGAATCTAGCAAGAATGTTTATTTC
ATGAAGCAAACTGTTGGAAATGCTTGTGGAACAATTGGACTTCTTCATGC
TGTTGGGAACGTCACTTCGGAAATCAAGTTTCAAGATGATTCATTCTTCG
ATAAATTTTACAAGTCCACAGCGAACTTGGATCCACAAGAGCGTGCAGCA
TTTCTTGAGAATGATAAGGAAATGGAAGTTGCTCATTCGGTAGCAGCTTC
AGCTGGTGACACAGAGGCTACCGATGACGTGAATGATCATTTTATCTGCT
TCACCTGTGTGGATGGGGAACTTTATGAACTTGATGGAGGGAAGTCGGGG
CCAATATCCCATGGTGCTTCGTCTCCAAGCAGCTTATTGCTGGATGCAGC
TAAAGTGATAAAGGGCATGATCCAGAAAAATCCTGAATCACTGAACTTTA
ATGTAATTGCCTTT
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